BO18757.complete Sequence
2080 bp assembled on 2010-10-20
> BO18757.complete
GAAGTTATCAGTCGACATGTCACTAGCCGGAGTCCTGACCTTTCAGCAGG
CCATATCTGGAGCTGTGTCACCACAGTATGGCACAGTGGGATCGCTAAAT
TCCCAGGTACCCGCTACCGGTGAAGCCGGAAAGCCGGGAATTGTGGGATC
CGATGGCATTGGCGGTGGCGGTGGCGGTTTACCTGGCGGATCTTCACACA
ACTTAAATTTGACGGTGGGCCTGGGGTTTCTCGGTGGTTCCAGCACCACT
TTGGCTGCTGTCGCCGAGGTGACTAGTGGACCGGATGGCAATGGCGACTC
CACCGACTCCCCATCTCCGGTCTCCATGATTCCCAGCAATCAGCAAAAGC
AGCAGCAGCAACTGTTGCAGTTGCAACTGCAGCAGGAGCAACAGCATCTG
CCCACCCATTTGCCCATGAAGCGGGAACGAGGCGTAGGCGAGTCCTCGGG
GGCCAGCACATCCGGCACCGCCATCGCCGAACTGGCCTCCTCCGTCGTCC
TGGCCACCCAGTCCGGCAAGCCGATGACGGAGCGACAACGCTTAAGGACA
TCCAGCATGCCGGCGGAGAGTAGAAGGCCCCGCCTGGCGGAGATGCGACG
TTCGGCCATCCATGCCGGTGATCCGGACATGACCTACTACCGTCTGCGAA
GCTTCAGCATCACCTCCCATGGCATCTGCAATTTGGGCGATTCCCTGAGA
AGCCGCAGGTCACGTTCGATCAACTCCGTGACTTCCACCGGCACCTCAAA
CAGCGGCGTGGATCGACACAATAGCAACGCATCGGGGGCATCGGGCGAAG
TCATCGACGGGGATCCCAATGTTCCAGCCTACAAAATTGCCATGCTCGGC
GCCTCCGGAGTGGGCAAGACCACACTGACTTACCAGTTCACCACTTCCGA
TTACATATGCGCCTACGACCTGAGTCTCGATGATGACTACGGACAGAAGA
CGGTGTCGGTGCTGGTCGATAACATTGAGACGGATTTGGAGATTATTGAT
CATCCCGCATGCGAGATGTCGACGGAGGCCTTCTGCGCCACCTACAACAT
CGACCTCTTCGTGGTGGTCTACTCTGTGATAGATCGAAACACTTTCGCAG
CAGCCGAGCGTGTCCTGCAGTATCTCAAGGAGAACGAGATGCTCTTGTCC
CGCGGAGCCATCCTGGTGGCCAACAAAACGGATCTGCAGCGACACCGAGT
TGTCACCCGTCAGATGGGTCGCAAGGTGGCCAAGGAAATAGCGTGCAAGT
TTATCGAGACGTCCTCGGGACTGGATCACAATGTGGACGAGCTGCTGGTC
GGCATTGTGGCCCAGGTGAAACTCAATCCGCAGCGTTTGCGATTGCTAAC
GGAATTGGAACTGCAGCGCCTGAATCTGCAGAGTACCATCCAGAAGCACC
GTGGAATGCACCTGCAGACGCGTCGGATGGTCCGCCAAATGAGCGTTTGC
CAGGGCGACGAGGAGATCTTCGATGGCGGATTGCCGGAGGGGCTGCAGAA
CGGCGAGGCCAACGATGATCCGGACGGAGTGCCTAGCACATCGAAGGCCA
GCCGGTCGCGGATCGAGAATCCCAACCGCAAGCCCTTAAACCTGGAAAGC
ATATTGAAGATGGGCGAAAGCGAGGTGGACGAGGATGAGGATGTGGTCAA
GTCGTCGCAGCTGAGCAAATTCAATATGCTGGCGGCCTCCATACGTCATC
GTCGTCCATTCCGCAAGCGTCGCTCGTTCGACGGCGGCGTTACCACGTCT
GCAGCCGCGGATGCAGCCGCCGAACTGCAGCGGCGCTATCAACTCCGGGC
CATGGATGATCTGCAGCTGGAGGGACGACTGGCAGGAGCGACGGAGGAGC
GGTTCGGGGAGAGAAGTGGACTGGCCGACAGCGATGACGAGGAGGACGGT
GAGGACATAGTGAACGGAGGACACCGGAATGCCTGCAACCGCAAGGTGGT
CAAGAAACTAACCGCCCGCACCAAGGTATTCATCTCGTCGGTGCTGCGCT
TCAAGAAGGCCATCAGCCTCAAGCGGCGCAACTCATCCAGCTGCAGTGAT
CTCTTCGTGATCGCAAGCTTTCTAGACCAT
BO18757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42541-RF | 4200 | CG42541-PF | 2151..4197 | 16..2062 | 10235 | 100 | Plus |
| CG42541-RE | 4254 | CG42541-PE | 2205..4251 | 16..2062 | 10235 | 100 | Plus |
| CG42541-RD | 4254 | CG42541-PD | 2205..4251 | 16..2062 | 10235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42541-RF | 8763 | CG42541-RF | 3267..5313 | 16..2062 | 10235 | 100 | Plus |
| CG42541-RE | 9704 | CG42541-RE | 3321..5367 | 16..2062 | 10235 | 100 | Plus |
| CG42541-RD | 8817 | CG42541-RD | 3321..5367 | 16..2062 | 10235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:22:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3895834..3896681 | 2062..1215 | 4240 | 100 | Minus |
| X | 23542271 | X | 3904029..3904590 | 577..16 | 2810 | 100 | Minus |
| X | 23542271 | X | 3896842..3897035 | 1214..1021 | 970 | 100 | Minus |
| X | 23542271 | X | 3901108..3901265 | 929..772 | 790 | 100 | Minus |
| X | 23542271 | X | 3901931..3902053 | 699..577 | 615 | 100 | Minus |
| X | 23542271 | X | 3897556..3897648 | 1021..929 | 465 | 100 | Minus |
| X | 23542271 | X | 3901786..3901862 | 774..698 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9007..9070 | 1493..1559 | 120 | 68.7 | Plus |
BO18757.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:41 Download gff for
BO18757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32776-RC | 403..2448 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:31:24 Download gff for
BO18757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42541-RD | 3322..5367 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:01 Download gff for
BO18757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42541-RD | 3322..5367 | 17..2064 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:01 Download gff for
BO18757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3901927..3902052 | 578..702 | 97 | <- | Minus |
| X | 3897556..3897647 | 930..1021 | 100 | <- | Minus |
| X | 3901108..3901262 | 775..929 | 100 | <- | Minus |
| X | 3901786..3901857 | 703..774 | 100 | <- | Minus |
| X | 3895832..3896681 | 1215..2064 | 99 | <- | Minus |
| X | 3896842..3897034 | 1022..1214 | 100 | <- | Minus |
| X | 3904029..3904589 | 17..577 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:31:24 Download gff for
BO18757.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3795960..3796085 | 578..702 | 97 | <- | Minus |
| arm_X | 3795141..3795295 | 775..929 | 100 | <- | Minus |
| arm_X | 3789865..3790714 | 1215..2064 | 99 | <- | Minus |
| arm_X | 3795819..3795890 | 703..774 | 100 | <- | Minus |
| arm_X | 3790875..3791067 | 1022..1214 | 100 | <- | Minus |
| arm_X | 3791589..3791680 | 930..1021 | 100 | <- | Minus |
| arm_X | 3798062..3798622 | 17..577 | 100 | | Minus |
BO18757.pep Sequence
Translation from 16 to 2080
> BO18757.pep
MSLAGVLTFQQAISGAVSPQYGTVGSLNSQVPATGEAGKPGIVGSDGIGG
GGGGLPGGSSHNLNLTVGLGFLGGSSTTLAAVAEVTSGPDGNGDSTDSPS
PVSMIPSNQQKQQQQLLQLQLQQEQQHLPTHLPMKRERGVGESSGASTSG
TAIAELASSVVLATQSGKPMTERQRLRTSSMPAESRRPRLAEMRRSAIHA
GDPDMTYYRLRSFSITSHGICNLGDSLRSRRSRSINSVTSTGTSNSGVDR
HNSNASGASGEVIDGDPNVPAYKIAMLGASGVGKTTLTYQFTTSDYICAY
DLSLDDDYGQKTVSVLVDNIETDLEIIDHPACEMSTEAFCATYNIDLFVV
VYSVIDRNTFAAAERVLQYLKENEMLLSRGAILVANKTDLQRHRVVTRQM
GRKVAKEIACKFIETSSGLDHNVDELLVGIVAQVKLNPQRLRLLTELELQ
RLNLQSTIQKHRGMHLQTRRMVRQMSVCQGDEEIFDGGLPEGLQNGEAND
DPDGVPSTSKASRSRIENPNRKPLNLESILKMGESEVDEDEDVVKSSQLS
KFNMLAASIRHRRPFRKRRSFDGGVTTSAAADAAAELQRRYQLRAMDDLQ
LEGRLAGATEERFGERSGLADSDDEEDGEDIVNGGHRNACNRKVVKKLTA
RTKVFISSVLRFKKAISLKRRNSSSCSDLFVIASFLDH
BO18757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42541-PF | 1399 | CG42541-PF | 718..1399 | 1..682 | 3437 | 100 | Plus |
| CG42541-PE | 1417 | CG42541-PE | 736..1417 | 1..682 | 3437 | 100 | Plus |
| CG42541-PD | 1417 | CG42541-PD | 736..1417 | 1..682 | 3437 | 100 | Plus |
| CG42541-PC | 1418 | CG42541-PC | 737..1418 | 1..682 | 3437 | 100 | Plus |
| Rgk2-PA | 740 | CG34390-PA | 381..715 | 138..466 | 550 | 39.8 | Plus |
