BO18803.complete Sequence
1765 bp assembled on 2010-10-20
GenBank Submission: KX795694
> BO18803.complete
GAAGTTATCAGTCGACATGCGCCCGCAATCAGCTGCGTGTCTATTACTGG
CCATCGTTGGCTTCGTGGGAGCCACCGAGTGGTGGGAGAGTGGAAACTAC
TACCAGATCTACCCGCGCTCCTTCCGGGATTCCGACGGAGACGGCATTGG
CGACCTGAACGGGGTCACTGAAAAGCTGCAGTACCTGAAAGACATCGGCT
TCACGGGCACATGGCTGTCGCCCATATTCAAGTCGCCCATGGTCGACTTT
GGTTACGACATATCGGACTTCTACCAGATCCATCCCGAATATGGAACCAT
GGAGGACTTTGAGCGAATGATCGCCAAGGCCAAGGAGGTGGGCATTAAAA
TCATCCTGGACTTCGTACCAAACCACTCAAGTACCGAAAACGAATGGTTC
ACCAAGTCTGTGGACAGTGACCCCGTCTACAAAGACTTCTACATCTGGCA
CGATGGCAAGATCAACAACGAGACCGGTGAGCGGGAGCCGCCGAGCAACT
GGAACTCTGAGTTTCGCTACAGCGCCTGGGAGTGGAACGAGGTGCGTCAG
CAGTACTACCTCCACCAGTTCGCCATCCAGCAGGCCGACCTCAACTATCG
CAATCCGGCCGTGGTTAACGAGATGAAGAACGTTATTCGCTTCTGGCTGG
GAAAGGGAGTATCCGGATTCCGTATAGATGCAGTTCCCTACTTGTTTGAG
GTGGATCTCGATCGCTACAACCAGTATCCGGACGAGCCTCTGACCAACGA
CTCCGTGAACTGTCCCGACCCCGATGACCACTGCTACACGCAGCACATCT
ATACACAGGACATGCCGGAAACAATTGACATGGTGTACCAGTGGCGTGAG
TTGGTGGATGAGTTTCATGTGGAGAACGGCGGAGATAAGAGGCTGCTGAT
GACGGAGGCGTACACCAGCTTTGAAAACATCATGACTTACTATGGAAATG
GAGTCAGGAATGGCTCCCACATTCCCTTCAACTTTGACTTCCTTACGAGC
ATCAACAACGCCTCTAAGGCCGGAGAGTACGTAGAACATATTAAGAAGTG
GATGGACGCCATGCCCGAGGGCGTTTATGCCAATTGGGTGCTGGGCAACC
ACGACAACAAGCGAGTAGCCTCCCGATTTGGTGTCCAGCGCACCGACCTT
ATCAACATCCTGCTGCAGACTCTGCCCGGCCACGCGGTCACCTACAATGG
AGAGGAGCTGGGCATGACCGACGTCTGGATCAGCTGGGAGGACACCGTTG
ATCCGAATGCGTGCAACTCCGATCCCGACAACTACTACGCCCGATCCAGG
GATCCTGCCCGATCTCCCTACCAGTGGGATGCCTCCTCCAAAGCAGGCTT
CACCAGTGCCGATCACACCTGGTTACCAGTGGCTGATGACTACAAAACCA
ACAACGCCCTGCAGCAGCTGCGAGCTCCACGTTCCCACCTGCAGATCTTC
AAGAAACTGGTGCGCGTGCGCAAGGAGCCATCTTTTCGCCAGGGAGAACT
CAACATTCAGGCAATCGACGACGATGTGATCATCTATTCACGACAAAAGA
CCGGAAGCGATCTCTATGTAATCGTTCTCAACCTGGGTAGCACCTCCAAG
ACCTTGGACCTGACCAAGTATTACGAACTGGGCACCCAGGCGGAGGTCAT
TACCACGTCCTTGAGCTCCCAGTACATCGATGGCGATGTTATCAAATCTA
CGGAGTTCGTTGCCAATCCCTATGTGGGCACCGTCCTAGTGGCTGTCGCA
AGCTTTCTAGACCAT
BO18803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A1-RA | 1734 | CG8696-PA | 1..1731 | 17..1747 | 8655 | 100 | Plus |
| Mal-A8-RA | 1767 | CG8690-PA | 117..623 | 100..606 | 495 | 73.2 | Plus |
| Mal-A6-RC | 1806 | CG30360-PC | 151..675 | 104..628 | 420 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A1-RA | 1826 | CG8696-RA | 21..1751 | 17..1747 | 8655 | 100 | Plus |
| Mal-A8-RA | 1814 | CG8690-RA | 146..652 | 100..606 | 495 | 73.2 | Plus |
| Mal-A6-RC | 1892 | CG30360-RC | 163..687 | 104..628 | 420 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8450554..8451884 | 1347..17 | 6655 | 100 | Minus |
| 2R | 25286936 | 2R | 8449739..8449944 | 1747..1542 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 8450002..8450204 | 1546..1344 | 1000 | 99.5 | Minus |
| 2R | 25286936 | 2R | 8472099..8472605 | 100..606 | 495 | 73.2 | Plus |
| 2R | 25286936 | 2R | 8465320..8465844 | 104..628 | 420 | 72 | Plus |
| 2R | 25286936 | 2R | 8458913..8459195 | 100..382 | 230 | 72.1 | Plus |
| 2R | 25286936 | 2R | 8471348..8471514 | 270..104 | 220 | 75.4 | Minus |
| 2R | 25286936 | 2R | 8456575..8456633 | 1248..1190 | 205 | 89.8 | Minus |
| 2R | 25286936 | 2R | 8471012..8471091 | 606..527 | 190 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:15:41 has no hits.
BO18803.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:14 Download gff for
BO18803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpH-RA | 16..1746 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:20 Download gff for
BO18803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 21..1751 | 17..1749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:46 Download gff for
BO18803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A1-RA | 21..1751 | 17..1749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:46 Download gff for
BO18803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8450006..8450201 | 1347..1542 | 100 | <- | Minus |
| 2R | 8449737..8449943 | 1543..1749 | 99 | <- | Minus |
| 2R | 8450555..8451884 | 17..1346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:20 Download gff for
BO18803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4337242..4337448 | 1543..1749 | 99 | <- | Minus |
| arm_2R | 4337511..4337706 | 1347..1542 | 100 | <- | Minus |
| arm_2R | 4338060..4339389 | 17..1346 | 100 | | Minus |
BO18803.pep Sequence
Translation from 16 to 1765
> BO18803.pep
MRPQSAACLLLAIVGFVGATEWWESGNYYQIYPRSFRDSDGDGIGDLNGV
TEKLQYLKDIGFTGTWLSPIFKSPMVDFGYDISDFYQIHPEYGTMEDFER
MIAKAKEVGIKIILDFVPNHSSTENEWFTKSVDSDPVYKDFYIWHDGKIN
NETGEREPPSNWNSEFRYSAWEWNEVRQQYYLHQFAIQQADLNYRNPAVV
NEMKNVIRFWLGKGVSGFRIDAVPYLFEVDLDRYNQYPDEPLTNDSVNCP
DPDDHCYTQHIYTQDMPETIDMVYQWRELVDEFHVENGGDKRLLMTEAYT
SFENIMTYYGNGVRNGSHIPFNFDFLTSINNASKAGEYVEHIKKWMDAMP
EGVYANWVLGNHDNKRVASRFGVQRTDLINILLQTLPGHAVTYNGEELGM
TDVWISWEDTVDPNACNSDPDNYYARSRDPARSPYQWDASSKAGFTSADH
TWLPVADDYKTNNALQQLRAPRSHLQIFKKLVRVRKEPSFRQGELNIQAI
DDDVIIYSRQKTGSDLYVIVLNLGSTSKTLDLTKYYELGTQAEVITTSLS
SQYIDGDVIKSTEFVANPYVGTVLVAVASFLDH
BO18803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A1-PA | 577 | CG8696-PA | 1..577 | 1..577 | 3123 | 100 | Plus |
| Mal-A5-PA | 630 | CG30359-PA | 43..602 | 21..583 | 1599 | 51.9 | Plus |
| Mal-A3-PA | 574 | CG8695-PA | 8..574 | 7..577 | 1567 | 50 | Plus |
| Mal-A4-PA | 579 | CG8693-PA | 13..573 | 11..574 | 1562 | 50.1 | Plus |
| Mal-A8-PA | 588 | CG8690-PA | 32..567 | 21..556 | 1562 | 53.1 | Plus |
