Clone BO18806 Report

Search the DGRC for BO18806

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptRpL9-RA
Protein status:BO18806.pep: Imported from assembly
Sequenced Size:604

Clone Sequence Records

BO18806.complete Sequence

604 bp assembled on 2009-05-13

GenBank Submission: KX797859

> BO18806.complete
GAAGTTATCAGTCGACATGCGTACCATTAATTCCAACCAGTGCGTGAAGA
TCCCTAAGGATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCATCACC
GGCACCCGCGGCACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTGGACAT
GTACATGCCCGACAAGCGCACCCTGAAGGTGGAGAAGTGGTTCGGAACCA
AGAAGGAGTTGGCCGCCGTCCGCACCGTCTGCAGTCACATCGAGAACATG
ATCAAGGGAGTCACGTTTGGATTCCAGTACAAGATGCGTGCTGTGTACGC
CCATTTCCCCATCAACTGTGTCACCTCCGAGAACAACACGGTCATTGAGA
TCCGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCT
GGCGTCACCGTGGTCAACTCCACTGCCCAGAAGGACGAACTTATCGTGGA
GGGAAACGATATTGAGTCTGTCTCCGGATCTGCCGCCCTCATCCAGCAGT
CCACGACCGTCAAGAACAAGGATATCCGTAAGTTCCTTGACGGTCTGTAC
GTGTCCGAGAAGACGACCGTTGTGAAGCTAGAGTCTGCAAGCTTTCTAGA
CCAT

BO18806.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL9-RC 573 CG6141-PC 1..570 17..586 2850 100 Plus
RpL9-RB 573 CG6141-PB 1..570 17..586 2850 100 Plus
RpL9-RA 573 CG6141-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpL9-RC 807 CG6141-RC 86..655 17..586 2850 100 Plus
RpL9-RB 798 CG6141-RB 159..728 17..586 2850 100 Plus
RpL9-RA 761 CG6141-RA 122..691 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11002910..11003239 586..257 1650 100 Minus
2L 23513712 2L 11003510..11003751 258..17 1210 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:54:56 has no hits.

BO18806.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:40 Download gff for BO18806.complete
Subject Subject Range Query Range Percent Splice Strand
RpL9-RB 128..697 17..588 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:32 Download gff for BO18806.complete
Subject Subject Range Query Range Percent Splice Strand
RpL9-RA 122..691 17..588 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:39 Download gff for BO18806.complete
Subject Subject Range Query Range Percent Splice Strand
RpL9-RA 122..691 17..588 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:39 Download gff for BO18806.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11002908..11003238 258..588 99 <- Minus
2L 11003511..11003751 17..257 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:32 Download gff for BO18806.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11002908..11003238 258..588 99 <- Minus
arm_2L 11003511..11003751 17..257 100   Minus

BO18806.pep Sequence

Translation from 16 to 604

> BO18806.pep
MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDK
RTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPIN
CVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIE
SVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVKLESASFLDH

BO18806.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpL9-PC 190 CG6141-PC 1..190 1..190 960 100 Plus
RpL9-PB 190 CG6141-PB 1..190 1..190 960 100 Plus
RpL9-PA 190 CG6141-PA 1..190 1..190 960 100 Plus