BO18810.complete Sequence
3772 bp assembled on 2010-10-20
GenBank Submission: KX797391
> BO18810.complete
GAAGTTATCAGTCGACATGACGACGACCAGCGTGTGCAAGAGGATCTCCT
CGAGCACGGCGTCCGCTGAGTTAACCAAATCCCTCCCAGCCACACCATCA
TCATCATCCCAGGGCTCGTCGTCCGTCATCTGCGAGGAGGTTTTCGACGA
GGCGTGTTTCCCCTCATCGGAGGAAATCAATGAGTATGCCTCCCTGATTG
GAATCGATCCTCAGAAGGAACCGCATTTGCTCTATCTGGCCAAGGAAGGA
TTGATGGCCGCATTGCCAACAGACTGGAAGATATGCTACTCGGAGGAGAA
GAATGGCCATTACTACCATAATACGCGCACCAAAGAGTCCCAATGGGACC
ATCCACTAGATGCCATATATCGCGATTTGGTTAATCAGGCGCGCCAGAAG
CCTTTGGACACGGGTTCGGTGGGGGATAACGATGATCTGTCGCAACTGGA
CTCCGGAATACGCAGCATGCAGGGTATCGATGATATTCCATCGCCGGGTC
CACTGCCCCTGAACAGTTTGGCCCGGAAATGGTCGGTGGCCAGCAAGGCC
AGCTTATTTAGTAGTGCCAAGAGTCGATTTTTGGAATCTGGATCCAAGGA
TATGGGTCGATTGCATCAGCTTGGCTTCGAGGTGACCAAGTCAAAGCCAC
AAATAGCGAATAAACCCGCGCCCACTAGTCAAATGAATGGAAAAACCGAT
AGGTCAGAGGAGAACGAAGGAGGTACGAAACCTTCGGGTACAGTATCGAT
GTTTCAAAAGGCACATAGACAGTTCGAAAGCGATGGATATACCTCGCCGT
CCGGTGTCAAGGGTATTCTACGCGATTCGAGCATAACCGATATAAGTCGT
AGGCTAGATCGACTGGAGCCCACGGTTGAGGGGGAGGATAAGAAGAGCGT
GCGATTTAATTTGGATCAGGGGCAGCGAGGGAAGAGCTCCCCCGAGGAGA
CTCAATCCATCAAGATGACGCAAGCCTATAAGCAAAATGAGCACTCACAG
TCGGAGGATGATGATGAGGATGTGGTGGTTCAAGGCGACGATGATGATGA
GGATGATGATGAGGATAATGATGTGATTGAAGATGAGGACGTAGATAAAG
ATGATAGGGAAGGAGCACTTAATCCTTGGCCCGATAATGACGAGGCCATA
TACAATCGTAATCCCTTCTTATCAGACGCGAATAAGACTATACCAAAGAC
TATACCGGAAGTAGTGAAAATATCAGGATCAGGAGATACAGTCTCGGATA
AAACTAAGGACACTGATGCACCAAAATTATTTTACGACGACACAGATTCC
GATTCGAAGGGCAGTTCGGTGCGTAGCTTTATTATTAATAAATCGGAACA
GGACTCATCACTTCTGGTCGGAAATAATGCCTTCGATTTGGAGGAACTAG
GACGAAAGCACAGCTACGAGCTGGAACAATTGCAGCTCAAATCGGCCCAA
GCACCTGCATCGGACAAGTCAATATGCAGTACTTCAGCCTTTAGGGCCAA
CATTGCGGACAAGGAGGCCCAGTTGCAGACCGACTTTGAGGCCATTCGAC
GAGATCACGAAGCGAAACTCAAGAGATTCCGTCACGAGTACGATCTCCGG
CTCACATCGCATCAGCACAAATTGGAGGAGGCATTCGAGCTGCAAATGGA
GAAATACCGAGTGCAATTGGAGCGGCAGCTGCAGAGCAAGCGCACCTTGA
TGGCCACCGAGCACAAGAGCCGAATGGACGCCCTGCAGGCCAATCACGAA
GAGATCCTACGCGATCTCGAGCGGGAATTGCACGGCGAGGAGGAGCTGCT
GCGGCGGGAGCACAGCTCCAGGCTGTCCCAGATGCGCGAGAAGTTCGCAC
GCGAGCTGGACGCGGAGAAGCAGCGATTCCGGGAGAAGGGCGAGGAGCGG
CTGTACGAGAAGGTCAGGTGCGAGAAGCGCCTGCTGGAGGATAAGTACAG
GTGCCTCAAGGAGAAGTACGTGCGCCTTAAGACGGACGTGAAGCTGTCGC
TGGAGCGAAGAAATCGCCGGCGGGAGGCGCAGATGGCGCCCCAGCATAAC
CACACCAACAGCACCAAGTCCACCAATAGTGGCACCGAAATGGAACGCTC
CATGGAGCGGTATTACAAACCGCAATCCGGAAATAGCGATAATCGCTCGC
TCAGCTACTCGGATCAGGCAATTGCCGGCGAGGCCATTGTCAAACCATGT
CCAGTTCCGCACAAGAGTCAACTGACCAAGTCGTACAACATACGGCAGTT
GCAGCTGCAGGATGATAATACTTCCATAAGTCAATCGGATACGACCCTAT
CGAATACCTATAATAATGGTCGTTATGGACCATTTCTGAAGTCCGCCAGC
GGAGTACTCTCCGCCAGAACGGCCAGTGATAATGGCAACTCTTCGAGGGA
TGGAGTGGTGGCTGCGGTGGCCACACAATCGAACCTCGAGAGGAACAACA
ATAGTAACCAGATCAAGGAGTCGACCGGAATCAATAGGATCGTCTTCTCG
CGCACCAAATCGGCATCCACGTCGCGCTTGAACTCGGATACCAGCTATAA
GGGCGAACGACCCTGCACTCCGGTGGAGAATTTGCGTCATCAGCTCCAGA
AACTCGAGGCGCTGGAGGATCAGTTTCCCGAGAATACCCTGGATGCACCT
TATCATCTGCGATACCCCTTCACCGACATCTCCATCAAGCCGAATGGTGT
GGGCTCGGAGTTGGAGTTCTTCAAGCATCGCATCCATCTGGAGCGGGATT
CGGTGCGTCGGGCCAAGGAATCGCTAAGGACACAGCGCACAAATTTCCGC
CTTAGACAGCGGGAGATCGGCCAGCAGCGGAAGATAACCGCCCTATCGCC
GAAACATTCCATTGATCAGCTAATCCAGGAGGAGAAGGAACTGACCGAGA
TGGAGGTGAATCTCCATCGCACTCGTTCCCTGCTGGGCGAGAAAATAATA
CGACTGCGACATTTGGAACAGAGTCTGCTGAGGATCTACGAGAAGGAGAA
ATCGATCCTGGACCTGGGCACCATGGACGATGCGGCCACACTTAGCGATC
TATCGTCGCACTCCAGTTCTGGCTTCAGTAGCACCGATTTGGCCAGTGCC
GCGGATTTCCACAAGAAGAAGGACTACTACCAGCAGGAGTCGAACGAGTG
TATTGAAAATTTGGAAATACTCAATGCCGAGATCCGGGAAATTCTCGATA
TATTCGGGCAAAAGCAATACCAACAGCAACATGATCAAACCGCATCGGGC
ATACCGATCCTATCGCCACGTGACCTCGGATGGTCACAGGTGCTCAAGCA
TCAGCACTCTGGCACTCAGAACTTCTCTCTATCGGATGACATCGAGGGCG
GTGGAGCCGTGCATATTCCCCATTCGATTCCCACGCTGGCCGATCGATTG
GAGACCTATCGCCAGCTAGCCGCCGGCAGGATGCAAAGCTCCATGGGCGC
CGCCATTCTCACGGCCAACACCATTGTGTCCCAGAGTCCACGGGCCGTCA
ACTACACCACTTGCCTGGTGGAGCGCACACGGGATCTGCGCAACTGGCTG
CGGCAAGCGAAGAATGAGCACGATTTTCTCGTTCAGCACGGCATTCCATC
GGGACAGACTGTGGTGGGCGGTGGAGCAGGTGGAGCAGGTGGCGGTGGTG
GTGGTGGTGGCGGTGGAGAGGTTAGTGCTTCTTTGAACAGCGGCAGTGCA
TCTATTATCAATACTACGACTACTGCTGGAAGCTCGGCGCGCAAGAACGA
TATCGCAAGCTTTCTAGACCAT
BO18810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:15:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9170-RC | 3741 | CG9170-PC | 1..3738 | 17..3754 | 18690 | 100 | Plus |
| CG9170-RA | 3741 | CG9170-PA | 1..3738 | 17..3754 | 18690 | 100 | Plus |
| CG9170-RB | 3741 | CG9170-PB | 1..3738 | 17..3754 | 18690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9170-RC | 4399 | CG9170-RC | 425..4162 | 17..3754 | 18690 | 100 | Plus |
| CG9170-RA | 4263 | CG9170-RA | 425..4162 | 17..3754 | 18690 | 100 | Plus |
| CG9170-RB | 4191 | CG9170-RB | 353..4090 | 17..3754 | 18690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15978204..15981673 | 3754..285 | 17350 | 100 | Minus |
| X | 23542271 | X | 15982364..15982520 | 173..17 | 785 | 100 | Minus |
| X | 23542271 | X | 15981739..15981851 | 285..173 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:15:00 has no hits.
BO18810.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:11 Download gff for
BO18810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RA | 422..4159 | 17..3756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:11 Download gff for
BO18810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RB | 353..4090 | 17..3756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:34 Download gff for
BO18810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9170-RB | 353..4090 | 17..3756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:34 Download gff for
BO18810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15982364..15982520 | 17..173 | 100 | | Minus |
| X | 15978202..15981672 | 286..3756 | 99 | <- | Minus |
| X | 15981739..15981850 | 174..285 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:11 Download gff for
BO18810.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15872235..15875705 | 286..3756 | 99 | <- | Minus |
| arm_X | 15875772..15875883 | 174..285 | 100 | <- | Minus |
| arm_X | 15876397..15876553 | 17..173 | 100 | | Minus |
BO18810.pep Sequence
Translation from 16 to 3772
> BO18810.pep
MTTTSVCKRISSSTASAELTKSLPATPSSSSQGSSSVICEEVFDEACFPS
SEEINEYASLIGIDPQKEPHLLYLAKEGLMAALPTDWKICYSEEKNGHYY
HNTRTKESQWDHPLDAIYRDLVNQARQKPLDTGSVGDNDDLSQLDSGIRS
MQGIDDIPSPGPLPLNSLARKWSVASKASLFSSAKSRFLESGSKDMGRLH
QLGFEVTKSKPQIANKPAPTSQMNGKTDRSEENEGGTKPSGTVSMFQKAH
RQFESDGYTSPSGVKGILRDSSITDISRRLDRLEPTVEGEDKKSVRFNLD
QGQRGKSSPEETQSIKMTQAYKQNEHSQSEDDDEDVVVQGDDDDEDDDED
NDVIEDEDVDKDDREGALNPWPDNDEAIYNRNPFLSDANKTIPKTIPEVV
KISGSGDTVSDKTKDTDAPKLFYDDTDSDSKGSSVRSFIINKSEQDSSLL
VGNNAFDLEELGRKHSYELEQLQLKSAQAPASDKSICSTSAFRANIADKE
AQLQTDFEAIRRDHEAKLKRFRHEYDLRLTSHQHKLEEAFELQMEKYRVQ
LERQLQSKRTLMATEHKSRMDALQANHEEILRDLERELHGEEELLRREHS
SRLSQMREKFARELDAEKQRFREKGEERLYEKVRCEKRLLEDKYRCLKEK
YVRLKTDVKLSLERRNRRREAQMAPQHNHTNSTKSTNSGTEMERSMERYY
KPQSGNSDNRSLSYSDQAIAGEAIVKPCPVPHKSQLTKSYNIRQLQLQDD
NTSISQSDTTLSNTYNNGRYGPFLKSASGVLSARTASDNGNSSRDGVVAA
VATQSNLERNNNSNQIKESTGINRIVFSRTKSASTSRLNSDTSYKGERPC
TPVENLRHQLQKLEALEDQFPENTLDAPYHLRYPFTDISIKPNGVGSELE
FFKHRIHLERDSVRRAKESLRTQRTNFRLRQREIGQQRKITALSPKHSID
QLIQEEKELTEMEVNLHRTRSLLGEKIIRLRHLEQSLLRIYEKEKSILDL
GTMDDAATLSDLSSHSSSGFSSTDLASAADFHKKKDYYQQESNECIENLE
ILNAEIREILDIFGQKQYQQQHDQTASGIPILSPRDLGWSQVLKHQHSGT
QNFSLSDDIEGGGAVHIPHSIPTLADRLETYRQLAAGRMQSSMGAAILTA
NTIVSQSPRAVNYTTCLVERTRDLRNWLRQAKNEHDFLVQHGIPSGQTVV
GGGAGGAGGGGGGGGGGEVSASLNSGSASIINTTTTAGSSARKNDIASFL
DH
BO18810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9170-PC | 1246 | CG9170-PC | 1..1246 | 1..1246 | 6390 | 100 | Plus |
| CG9170-PA | 1246 | CG9170-PA | 1..1246 | 1..1246 | 6390 | 100 | Plus |
| CG9170-PB | 1246 | CG9170-PB | 1..1246 | 1..1246 | 6390 | 100 | Plus |
