BO18818.complete Sequence
2149 bp assembled on 2010-10-20
GenBank Submission: KX799695
> BO18818.complete
GAAGTTATCAGTCGACATGCTAGACCTCGTTCACAAAGCCACGCTGCATA
GCATGGTCTGTCAGGCAATCCTAGTGTTAATCTGTTTGCTATGCTACGGA
TGCGGTGGCCTCAGTGGAGCGAAGTTTGTCTTCGATGATACGGTGGCCAT
CGTCAAGAACCGGGATGTCAACTCACTGCCCACCAACTGGACGGCGATCT
TCACGCACGACTTCTGGGGTGCTTCCTTGCTCAGTTCCGATTCCCACAAA
TCATTTCGGCCACTGACCACCCTGATGTTCCATTGCGAGTATGCCCTTCT
GGGGCTAAGTGCCGCCCACATGAAGTTCCTAAACCTCCTGCTACACTGCG
TCAACACGCTGCTCATGTGGCGATTGATTCGCTCTCTCTATGTTCCGGAG
GTCAGCACGGCAAGATGGGCCATCCTCTCCGCTGCTCTATTTGCCGCCCA
TCCAATTCACACAGAGGCGGTTTCTGGTGTGGTTGGAAGGGCCGAGCTCA
TGTTCGGCATGATTCACTTGTTGTGTCTTCTGCTGACCGTGGCCAATACC
GGAAGACTTGGTCCACAGACTGGCGGTCTAATCATGCTGCTCACCGCTGT
GGGAATGCTGTTCAAGGAGTCCGCTGTGACCATCCCCATGTCGTGTGTAC
TATTGGATTACTTTCAAAACGGCTACTATCATCTGCGATTCAAGGATCAG
TGGAGTCTTTTGCGCACCCGGATCAGCTACTTGTTCTACTTGCTGGGTAC
CTTGGGTCTGCTGACGGCTCGCCTTTGGTGGCAGGACTTTGAGACGCCTA
CCTTCAAGGAAGTTGACAACCCCGTTGCGCACAATGAGCACGTGCTGACC
CGTGGGCTCTCCCAGCAGTATCTGCTGGTCATGAACATCTGGCTGATGCT
GTGCCCCCACTGGCTATGCTACGACTGGGCATTGGGTTGCGTCAAGTTGG
TGACCAACATCTGGGATCTGAGACTGCAGGGCGTCATCGGATTCTACTCC
ATCGTATTGGTGGCTCTGATGAACTTCCGACGGCTGCCCGGAATGATGTT
AGCTCTGGGTTTAATGATCGTCCCGTTCCTGCCCGCGTCGGGAATCATTT
GCGTAGGATTCGTGATTGCCGAACGGACGCTCTATGTACCCTCCATTGGC
TTTTGCCTGCTGTCCATCTATGGATTCTTATATTGGTATGACAGCAGTAC
GGAAAACACCCACTGGCGCACTGCTCTACGGATTCTTTTAATGCTGCTCT
TTTCGGTTATGATGGTACGGACTCGGCAGCGAGCTACTGACTGGCTTAAC
GAGGAGCAGTTGTTCAAGTCCGCGCTACAGGTGTGTCCTGACAATGCCAA
GGTACACTATAACATAGCCCGACTGGCCACTGATATGGGAAACAATACGA
AAGCCTTTCAGCACTACCACAGGGCCATTGAATTGTATCCGAACTATGAG
TCAGCTCTTATGAACCTCGGCAACCTGTATCGGGAGCACGGTCAACTATC
CACCGCCGAGGAATACATTCGATTGGCTTTGCAGGCGTATCCCGCATTTC
CAGCGGCTTGGATGAATCTCGGCATTGTGCAGTCGGCTCAGGGAAAGTAC
GACAAGGCTCTGGCCAGCTATGAGAAGGCCCTGAAGTACAGAGCCAATTT
CGCCGTCTGCTACTACAACATGGGCAATCTGTATCTGGAGCAGAAACGTT
ACGCCGAAGCGCTTCATCATTGGCAGCATGCTGTGGCACTAAATCCCCGC
CAGCCAAAAGCCTGGGCTAACATTCTGACAATGCTGGACAACAAGGGGTT
GCAGGATGACGCCTTGCGCATCTCTAATCAGGCTCTCCAACATCTACCCA
ACGATGTCAGTATCCTTTTCATTCGAGCAAACGTGCTTGGCAAATTAAAA
CATTATACGGAGGCGGAGGCGATCTACAAGCGCGTTATTGAGCTGGAGCC
CCACAACACATTGTACCACACGAATCTCGGAGTTCTCTATCATCGCTGGG
ACAAGACGCAGGAGGCTATAGAGGCTTATCGAACTGCAATAAGTATTAGT
GCGGCTAGAGCAACGACAGCCCGGGAGAATCTCAGCAAGCTCTTAAAACG
CCTGGAAAGGGAGGCGCAAGTCATGCAGAGAGCAAGCTTTCTAGACCAT
BO18818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5038-RA | 2118 | CG5038-PA | 1..2115 | 17..2131 | 10560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5038-RA | 2702 | CG5038-RA | 127..2241 | 17..2131 | 10560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15351351..15353465 | 17..2131 | 10560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:14:37 has no hits.
BO18818.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:09 Download gff for
BO18818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5038-RA | 126..2240 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:06 Download gff for
BO18818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5038-RA | 127..2241 | 17..2133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:24 Download gff for
BO18818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5038-RA | 127..2241 | 17..2133 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:24 Download gff for
BO18818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15351351..15353465 | 17..2133 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:06 Download gff for
BO18818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11177073..11179187 | 17..2133 | 99 | | Plus |
BO18818.pep Sequence
Translation from 16 to 2149
> BO18818.pep
MLDLVHKATLHSMVCQAILVLICLLCYGCGGLSGAKFVFDDTVAIVKNRD
VNSLPTNWTAIFTHDFWGASLLSSDSHKSFRPLTTLMFHCEYALLGLSAA
HMKFLNLLLHCVNTLLMWRLIRSLYVPEVSTARWAILSAALFAAHPIHTE
AVSGVVGRAELMFGMIHLLCLLLTVANTGRLGPQTGGLIMLLTAVGMLFK
ESAVTIPMSCVLLDYFQNGYYHLRFKDQWSLLRTRISYLFYLLGTLGLLT
ARLWWQDFETPTFKEVDNPVAHNEHVLTRGLSQQYLLVMNIWLMLCPHWL
CYDWALGCVKLVTNIWDLRLQGVIGFYSIVLVALMNFRRLPGMMLALGLM
IVPFLPASGIICVGFVIAERTLYVPSIGFCLLSIYGFLYWYDSSTENTHW
RTALRILLMLLFSVMMVRTRQRATDWLNEEQLFKSALQVCPDNAKVHYNI
ARLATDMGNNTKAFQHYHRAIELYPNYESALMNLGNLYREHGQLSTAEEY
IRLALQAYPAFPAAWMNLGIVQSAQGKYDKALASYEKALKYRANFAVCYY
NMGNLYLEQKRYAEALHHWQHAVALNPRQPKAWANILTMLDNKGLQDDAL
RISNQALQHLPNDVSILFIRANVLGKLKHYTEAEAIYKRVIELEPHNTLY
HTNLGVLYHRWDKTQEAIEAYRTAISISAARATTARENLSKLLKRLEREA
QVMQRASFLDH
BO18818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5038-PA | 705 | CG5038-PA | 1..705 | 1..705 | 3713 | 100 | Plus |
| CG4050-PB | 926 | CG4050-PB | 40..785 | 19..698 | 673 | 28.9 | Plus |
| CG4050-PA | 926 | CG4050-PA | 40..785 | 19..698 | 673 | 28.9 | Plus |
| CG4341-PC | 908 | CG4341-PC | 21..313 | 34..331 | 407 | 37.4 | Plus |
| CG4341-PA | 938 | CG4341-PA | 51..343 | 34..331 | 407 | 37.4 | Plus |
| CG4341-PC | 908 | CG4341-PC | 475..903 | 343..692 | 341 | 25.9 | Plus |
| CG4050-PB | 926 | CG4050-PB | 617..888 | 430..698 | 209 | 24.1 | Plus |
| CG4050-PA | 926 | CG4050-PA | 617..888 | 430..698 | 209 | 24.1 | Plus |
