BO18824.complete Sequence
826 bp assembled on 2010-10-01
GenBank Submission: KX794399
> BO18824.complete
GAAGTTATCAGTCGACATGGATTCTACTTTAAATATTGAGAATGTCAATG
ACCCAACATCCATTGCATCTGATTTATCGGCCGAAAACACTAAAGCAGAC
CTTGTTTCGCTAAATGAACCGAATGTCAATGACCAAACATCCAGTGCATC
TGATTTGACGGCCGAAAACACTAAAGCAGACCATGATTCGCTAAATAAAC
CTAAGGATTTTAATAACCAAATTCTGAACATTATATCGGATATAGATATA
AATATAAAAGCACAGGAAAAAATAACACAGCTTAAAGAACAAGAACTAAA
ACTCATTCAGAAACAGAATGATCTGGCAAATGAAATCCATAAGCAGCAGA
TCCTAGCTAAGCAGCTTAGTGCACAAAATCAGCTTAAACAAAATGAATGT
CAAAGTGGAGAGCTCGACTTACACAGTCAATATCAAAATGAGCGCGGCGG
ACCCACCTCGACACTGTATCAGGAAAAAAATATAGCCAGTAAAGAATCCG
CTAATGTGTCGAAGACGGTTGATTTGCGAAAAATATTTACACCTGCGACC
GATGCTGCTGAAATATTACCGAAAAACCGAAAGCTATATGCCTCGTCTGC
ATTTTATTCTCCAACACTACACCCTACAGTGGAAGACCAAGTCGAGCTAG
CTCGAAGAATTTCACATTCATTAAGCGATATAAGTAATCAAACCTCTAAG
GGTCAGTCTATGTATGTCAATCGCAAAAAACGCTCAGACAAATGGGTTCA
TGAAGGTGGATCTCAAGGTAATGTTTTTTTTCAATATTTTTTGTTGTCAG
TCAGTTATGCAAGCTTTCTAGACCAT
BO18824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RD | 795 | CG1674-PD | 1..792 | 17..808 | 3960 | 100 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 1..757 | 17..773 | 3770 | 99.9 | Plus |
| CG1674-RI | 1770 | CG1674-PI | 1..751 | 17..767 | 3755 | 100 | Plus |
| CG1674-RD | 795 | CG1674-PD | 24..104 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RD | 795 | CG1674-PD | 105..185 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 24..104 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RJ | 2085 | CG1674-PJ | 105..185 | 40..120 | 300 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-RD | 1457 | CG1674-RD | 222..1013 | 17..808 | 3960 | 100 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 195..951 | 17..773 | 3770 | 99.9 | Plus |
| CG1674-RI | 2131 | CG1674-RI | 222..972 | 17..767 | 3755 | 100 | Plus |
| CG1674-RD | 1457 | CG1674-RD | 245..325 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RD | 1457 | CG1674-RD | 326..406 | 40..120 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 218..298 | 121..201 | 300 | 91.4 | Plus |
| CG1674-RJ | 2419 | CG1674-RJ | 299..379 | 40..120 | 300 | 91.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 237269..237560 | 203..494 | 1460 | 100 | Plus |
| 4 | 1348131 | 4 | 240645..240874 | 579..808 | 1150 | 100 | Plus |
| 4 | 1348131 | 4 | 240314..240410 | 494..590 | 440 | 96.9 | Plus |
| 4 | 1348131 | 4 | 234263..234345 | 39..121 | 415 | 100 | Plus |
| 4 | 1348131 | 4 | 236394..236475 | 121..202 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 236393..236474 | 39..120 | 305 | 91.5 | Plus |
| 4 | 1348131 | 4 | 234264..234344 | 121..201 | 300 | 91.4 | Plus |
Blast to na_te.dros performed 2014-11-28 08:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 577..646 | 246..315 | 116 | 62.9 | Plus |
BO18824.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-01 11:50:43 Download gff for
BO18824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 218..1009 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:31 Download gff for
BO18824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 222..1013 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:57 Download gff for
BO18824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1674-RD | 222..1013 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:57 Download gff for
BO18824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 231954..231977 | 17..40 | 100 | -> | Plus |
| 4 | 234265..234345 | 41..121 | 100 | -> | Plus |
| 4 | 236395..236475 | 122..202 | 100 | -> | Plus |
| 4 | 237269..237559 | 203..493 | 100 | -> | Plus |
| 4 | 240314..240398 | 494..578 | 100 | -> | Plus |
| 4 | 240645..240874 | 579..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:31 Download gff for
BO18824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 252580..252603 | 17..40 | 100 | -> | Plus |
| arm_4 | 254891..254971 | 41..121 | 100 | -> | Plus |
| arm_4 | 257021..257101 | 122..202 | 100 | -> | Plus |
| arm_4 | 257895..258185 | 203..493 | 100 | -> | Plus |
| arm_4 | 260940..261024 | 494..578 | 100 | -> | Plus |
| arm_4 | 261271..261500 | 579..810 | 99 | | Plus |
BO18824.pep Sequence
Translation from 16 to 826
> BO18824.pep
MDSTLNIENVNDPTSIASDLSAENTKADLVSLNEPNVNDQTSSASDLTAE
NTKADHDSLNKPKDFNNQILNIISDIDINIKAQEKITQLKEQELKLIQKQ
NDLANEIHKQQILAKQLSAQNQLKQNECQSGELDLHSQYQNERGGPTSTL
YQEKNIASKESANVSKTVDLRKIFTPATDAAEILPKNRKLYASSAFYSPT
LHPTVEDQVELARRISHSLSDISNQTSKGQSMYVNRKKRSDKWVHEGGSQ
GNVFFQYFLLSVSYASFLDH
BO18824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1674-PD | 264 | CG1674-PD | 1..264 | 1..264 | 1332 | 100 | Plus |
| CG1674-PJ | 694 | CG1674-PJ | 1..252 | 1..252 | 1271 | 100 | Plus |
| CG1674-PI | 589 | CG1674-PI | 1..255 | 1..257 | 1260 | 98.4 | Plus |
| CG1674-PK | 860 | CG1674-PK | 1..279 | 1..252 | 1233 | 90.3 | Plus |
| CG1674-PH | 884 | CG1674-PH | 198..442 | 8..252 | 1233 | 99.6 | Plus |
