BO18840.complete Sequence
331 bp assembled on 2009-05-13
GenBank Submission: KX800092
> BO18840.complete
GAAGTTATCAGTCGACATGTCGCAATCCGATAACGTGGCACGTGAGCAAA
CTGCGGCAAATGCAGGGCCGGATGCATGTCAAGGATGCCGCGGCCAATTG
CCAAATGCCACGCCCGTGGAAGTCGAGGACATGGCCTTGCCGTCGATGGA
GCGTCTCATTCGAAAGGCCAACATGGCCCAGAAAATGCTGAACGATGTGA
TGAAACAGATCCAGAAGCAGCAGCAGCAGGAATCTCAACTCTCCATCAAG
GAGACCAAGTCCAAGCACCGCAGCTCCGATGGAGTTCCAGTTCCGACCAC
AGTGACTGCGAGCGCAAGCTTTCTAGACCAT
BO18840.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8620-RA | 300 | CG8620-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
CG8620-RB | 564 | CG8620-PB | 1..268 | 17..284 | 1340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8620-RA | 712 | CG8620-RA | 149..445 | 17..313 | 1485 | 100 | Plus |
CG8620-RB | 775 | CG8620-RB | 148..415 | 17..284 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7158247..7158514 | 17..284 | 1340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 1731..1794 | 190..253 | 104 | 62.5 | Plus |
BO18840.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:23 Download gff for
BO18840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8620-RA | 149..445 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:28 Download gff for
BO18840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8620-RA | 149..445 | 17..315 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:54 Download gff for
BO18840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8620-RA | 149..445 | 17..315 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:54 Download gff for
BO18840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7158247..7158514 | 17..284 | 100 | -> | Plus |
3L | 7158579..7158607 | 285..315 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:28 Download gff for
BO18840.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7151347..7151614 | 17..284 | 100 | -> | Plus |
arm_3L | 7151679..7151707 | 285..315 | 93 | | Plus |
BO18840.pep Sequence
Translation from 16 to 331
> BO18840.pep
MSQSDNVAREQTAANAGPDACQGCRGQLPNATPVEVEDMALPSMERLIRK
ANMAQKMLNDVMKQIQKQQQQESQLSIKETKSKHRSSDGVPVPTTVTASA
SFLDH
BO18840.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8620-PA | 99 | CG8620-PA | 1..99 | 1..99 | 498 | 100 | Plus |
CG8620-PB | 187 | CG8620-PB | 1..89 | 1..89 | 449 | 100 | Plus |