Clone BO18840 Report

Search the DGRC for BO18840

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG8620-RA
Protein status:BO18840.pep: Imported from assembly
Sequenced Size:331

Clone Sequence Records

BO18840.complete Sequence

331 bp assembled on 2009-05-13

GenBank Submission: KX800092

> BO18840.complete
GAAGTTATCAGTCGACATGTCGCAATCCGATAACGTGGCACGTGAGCAAA
CTGCGGCAAATGCAGGGCCGGATGCATGTCAAGGATGCCGCGGCCAATTG
CCAAATGCCACGCCCGTGGAAGTCGAGGACATGGCCTTGCCGTCGATGGA
GCGTCTCATTCGAAAGGCCAACATGGCCCAGAAAATGCTGAACGATGTGA
TGAAACAGATCCAGAAGCAGCAGCAGCAGGAATCTCAACTCTCCATCAAG
GAGACCAAGTCCAAGCACCGCAGCTCCGATGGAGTTCCAGTTCCGACCAC
AGTGACTGCGAGCGCAAGCTTTCTAGACCAT

BO18840.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8620-RA 300 CG8620-PA 1..297 17..313 1485 100 Plus
CG8620-RB 564 CG8620-PB 1..268 17..284 1340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8620-RA 712 CG8620-RA 149..445 17..313 1485 100 Plus
CG8620-RB 775 CG8620-RB 148..415 17..284 1340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7158247..7158514 17..284 1340 100 Plus
Blast to na_te.dros performed 2014-11-27 14:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy8 4955 gypsy8 GYPSY8 4955bp 1731..1794 190..253 104 62.5 Plus

BO18840.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:23 Download gff for BO18840.complete
Subject Subject Range Query Range Percent Splice Strand
CG8620-RA 149..445 17..315 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:28 Download gff for BO18840.complete
Subject Subject Range Query Range Percent Splice Strand
CG8620-RA 149..445 17..315 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:54 Download gff for BO18840.complete
Subject Subject Range Query Range Percent Splice Strand
CG8620-RA 149..445 17..315 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:54 Download gff for BO18840.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7158247..7158514 17..284 100 -> Plus
3L 7158579..7158607 285..315 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:28 Download gff for BO18840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7151347..7151614 17..284 100 -> Plus
arm_3L 7151679..7151707 285..315 93   Plus

BO18840.pep Sequence

Translation from 16 to 331

> BO18840.pep
MSQSDNVAREQTAANAGPDACQGCRGQLPNATPVEVEDMALPSMERLIRK
ANMAQKMLNDVMKQIQKQQQQESQLSIKETKSKHRSSDGVPVPTTVTASA
SFLDH

BO18840.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8620-PA 99 CG8620-PA 1..99 1..99 498 100 Plus
CG8620-PB 187 CG8620-PB 1..89 1..89 449 100 Plus