BO18842.complete Sequence
454 bp assembled on 2009-05-13
GenBank Submission: KX799969
> BO18842.complete
GAAGTTATCAGTCGACATGAATTTTCTGCGGCAATCCTTTGGCATTACGA
AACAGTTGGCTTCGCAGGCCATCCAGTGCAGCTATGAGACCGCCGTCCGT
GGAATGGCATCGCTGCAGCAGATGCACCGCAGCGGACCGCACATAAAGAC
GCGTCCGCCGCGCCAGCCGCTGGATGGAAAGCCCTTCGCCAAGGGCGTTG
TCCTGAAGACGCTGATAAAGAAGCCCAAGAAGCCGAACTCGGCCAATCGA
AAGTGCGTGCTGGTGCGCCTCTCCACCGGCAAGGAGATGGTGGCCTACAT
CCCCGGCATCGGGCACAACCTGCAAGAGCACAACATTGTACTGTGCCGCG
TGGGGCGTCTGCAGGACGTGCCCGGCGTTAAGCTGAAGGCTGTGCGCGGA
GTCTACGACTTGGCGCACGTCGTCAAGAAGAGCCAAGCAAGCTTTCTAGA
CCAT
BO18842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-RB | 423 | CG7925-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
| tko-RC | 465 | CG7925-PC | 94..462 | 68..436 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-RB | 663 | CG7925-RB | 191..611 | 16..436 | 2105 | 100 | Plus |
| tko-RC | 1596 | CG7925-RC | 1176..1544 | 68..436 | 1845 | 100 | Plus |
| tko-RC | 1596 | CG7925-RC | 191..244 | 16..69 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2442365..2442733 | 436..68 | 1845 | 100 | Minus |
| X | 23542271 | X | 2443734..2443786 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:00 has no hits.
BO18842.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:20 Download gff for
BO18842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..611 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:30 Download gff for
BO18842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..611 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:40 Download gff for
BO18842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..611 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:40 Download gff for
BO18842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2442363..2442732 | 69..438 | 99 | <- | Minus |
| X | 2443734..2443785 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:30 Download gff for
BO18842.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2336396..2336765 | 69..438 | 99 | <- | Minus |
| arm_X | 2337767..2337818 | 17..68 | 100 | | Minus |
BO18842.pep Sequence
Translation from 16 to 454
> BO18842.pep
MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ
PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH
NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQASFLDH
BO18842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-PB | 140 | CG7925-PB | 1..140 | 1..140 | 722 | 100 | Plus |
| tko-PC | 154 | CG7925-PC | 32..154 | 18..140 | 639 | 100 | Plus |
| RpS23-PA | 143 | CG8415-PA | 31..124 | 42..127 | 138 | 39.4 | Plus |
| RpS23-PB | 143 | CG8415-PB | 31..124 | 42..127 | 138 | 39.4 | Plus |
