BO18845.complete Sequence
865 bp assembled on 2009-05-13
GenBank Submission: KX797259
> BO18845.complete
GAAGTTATCAGTCGACATGAAGCCACAAGGAATACCACCGACTACTACAC
GAATCAGCCAGACCAAGATGTCCTTTCGCGGCAAGAATGCAGTGGTGACC
GGTGGAGCTGGAGGCATTGGACTGCAGGTGTCCAAGCAGCTCCTGGCCGC
TGGAGCAGCGGTGGCCATCATTGATTTGCAGGATAATCTGGAGGAGTTTG
TAAAACTTAGGGCCGCTCATCCCACCCAAAGCGTAATGATCATCAAGATG
GATGTGGCGAACAAGAAGGGTGTGGAAGCCACCTATGAGGAGATAGCCAA
GACCTTCGGTAACATCGATATTGTGGTCAATGTAGCCGGGATTTTTAACG
ACAAGGATGTGCAGAGGACTCTGTTGGTAAATCTCGGTGGAATCATCAAT
TCCACACTGAGTGCATTGCCCTACATGGGCAAGGATAATGGCGGCAAGGG
TGGCATTGTGGTTAACATGAGCTCGGTGGTGGGTCTGGATCCAATGTTCA
TCATTCCCGTTTACGGAGCCACCAAGGCTGGCATCATCAACTTCACCCGG
TGCTTGGCGAACGAAAAGTACTATCAACGCTCGGGCATCAAGTTTGTGAC
TGTTTGTCCTGGAGCTACAATGACGGACATGTTCACCAACTTTACGGAGA
AGATCATCTTCCCGGAAACGAGTGACGAGACCTATAGGATCCTGGATAGG
CTAAACAAGCAGAGTGCCGCTGATGTCTCTCGATGCATTCTGAATGTCCT
GGAGAAGGACAAGAACGGAGCTGTCTATGTCATCGAGGGTAAGCGCGTTT
ACCCTTTGGAAATTAAGCCCCAGTGGACGGGCAAGGAACAGGCCCTTGCA
AGCTTTCTAGACCAT
BO18845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RB | 834 | CG4899-PB | 1..831 | 17..847 | 4155 | 100 | Plus |
| Pdh-RA | 837 | CG4899-PA | 1..834 | 17..847 | 4090 | 99.6 | Plus |
| Pdh-RD | 783 | CG4899-PD | 1..780 | 68..847 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-RB | 942 | CG4899-RB | 17..847 | 17..847 | 4155 | 100 | Plus |
| Pdh-RD | 913 | CG4899-RD | 1..818 | 30..847 | 4090 | 100 | Plus |
| Pdh-RA | 945 | CG4899-RA | 17..850 | 17..847 | 4090 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16353680..16354079 | 559..160 | 2000 | 100 | Minus |
| 3L | 28110227 | 3L | 16353328..16353616 | 847..559 | 1445 | 100 | Minus |
| 3L | 28110227 | 3L | 16354136..16354281 | 162..17 | 730 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:47:11 has no hits.
BO18845.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:42 Download gff for
BO18845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..847 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:33:58 Download gff for
BO18845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..847 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:32 Download gff for
BO18845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdh-RB | 17..847 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:32 Download gff for
BO18845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16353326..16353615 | 560..849 | 99 | <- | Minus |
| 3L | 16353680..16354078 | 161..559 | 100 | <- | Minus |
| 3L | 16354138..16354281 | 17..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:33:58 Download gff for
BO18845.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16346426..16346715 | 560..849 | 99 | <- | Minus |
| arm_3L | 16346780..16347178 | 161..559 | 100 | <- | Minus |
| arm_3L | 16347238..16347381 | 17..160 | 100 | | Minus |
BO18845.pep Sequence
Translation from 16 to 865
> BO18845.pep
MKPQGIPPTTTRISQTKMSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAVA
IIDLQDNLEEFVKLRAAHPTQSVMIIKMDVANKKGVEATYEEIAKTFGNI
DIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGKGGIVVN
MSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPGA
TMTDMFTNFTEKIIFPETSDETYRILDRLNKQSAADVSRCILNVLEKDKN
GAVYVIEGKRVYPLEIKPQWTGKEQALASFLDH
BO18845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdh-PB | 277 | CG4899-PB | 1..277 | 1..277 | 1406 | 100 | Plus |
| Pdh-PA | 278 | CG4899-PA | 1..278 | 1..277 | 1394 | 99.6 | Plus |
| Pdh-PD | 260 | CG4899-PD | 1..260 | 18..277 | 1317 | 100 | Plus |
| Pdh-PC | 261 | CG4899-PC | 1..261 | 18..277 | 1305 | 99.6 | Plus |
| CG4842-PA | 259 | CG4842-PA | 1..253 | 18..270 | 495 | 39.4 | Plus |
