BO18849.complete Sequence
1678 bp assembled on 2009-08-12
> BO18849.complete
GAAGTTATCAGTCGACATGCTGAATCCGACCGAGCCGCAGCCAGTGCCAC
TATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATC
CGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCT
TCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAG
GAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAA
CTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGA
CGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGC
GCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTC
AAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACA
GAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCG
TTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAAT
CTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCG
CTATACTTGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATT
CCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCAAGTCGGGCGACATT
TTGCAGATCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACAT
TACTGCCGAATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAGG
AGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACTACGTTCACAAGATT
GGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACCG
ATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCTGCTGCTCTATGAGG
AGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCCTGGTTCTCATCGGT
GTTTCCGGTGTGGGAAGACGTACGCTCAAGAATCGGCTGATCAACAGCGA
TGTGGACAAGTTCGGAGCGGTCATTCCACATACCAGTCGCCCCAAGCGCG
CCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGGACCGCGAGGAAATG
GAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTACGGCGAGCACAATGG
CAATCTGTACGGCACGCATTTGCAGTCCATCAAGGATGTGATCAACAGTG
GGCGCATGTGCATCCTGGATTGTGCACCGAATGCCCTGAAGATCCTGCAC
AACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTGGCAGCGCCTGGCAT
GGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGCCACGGGCTCCAACC
GGAATTTATCTTTTGATCGCCAGAGTTCCATAAGATTCAGCTCCAGACGC
GCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAGGACGACGACCTTGT
CGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAAGTATGAGAAATACT
TCGACATGGTCATCGTGAACGAGGACTTCGATGAGACGTTCCGCCAGGTG
GTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAGTGGGTGCCTGTCAA
CTGGATCTACGCAAGCTTTCTAGACCAT
BO18849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RD | 1848 | CG9326-PD | 202..1845 | 17..1660 | 8190 | 99.9 | Plus |
vari-RF | 1410 | CG9326-PF | 355..1407 | 608..1660 | 5250 | 99.9 | Plus |
vari-RC | 1410 | CG9326-PC | 355..1407 | 608..1660 | 5250 | 99.9 | Plus |
vari-RF | 1410 | CG9326-PF | 1..291 | 317..607 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RD | 2717 | CG9326-RD | 486..2129 | 17..1660 | 8190 | 99.9 | Plus |
vari-RF | 2379 | CG9326-RF | 739..1791 | 608..1660 | 5250 | 99.9 | Plus |
vari-RC | 2320 | CG9326-RC | 680..1732 | 608..1660 | 5250 | 99.9 | Plus |
vari-RF | 2379 | CG9326-RF | 88..675 | 20..607 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20791230..20791664 | 607..173 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 20789721..20790052 | 1411..1080 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 20790125..20790335 | 1079..869 | 1040 | 99.5 | Minus |
2L | 23513712 | 2L | 20789250..20789425 | 1660..1485 | 880 | 100 | Minus |
2L | 23513712 | 2L | 20790391..20790558 | 868..701 | 840 | 100 | Minus |
2L | 23513712 | 2L | 20792113..20792267 | 173..19 | 760 | 99.4 | Minus |
2L | 23513712 | 2L | 20790622..20790720 | 706..608 | 495 | 100 | Minus |
2L | 23513712 | 2L | 20789585..20789660 | 1487..1412 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:32:14 has no hits.
BO18849.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-13 17:08:18 Download gff for
BO18849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 484..2127 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:20 Download gff for
BO18849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 486..2129 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:48 Download gff for
BO18849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 486..2129 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:48 Download gff for
BO18849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20789248..20789423 | 1487..1662 | 98 | <- | Minus |
2L | 20789586..20789660 | 1412..1486 | 100 | <- | Minus |
2L | 20789721..20790052 | 1080..1411 | 100 | <- | Minus |
2L | 20790125..20790335 | 869..1079 | 99 | <- | Minus |
2L | 20790391..20790552 | 707..868 | 100 | <- | Minus |
2L | 20790622..20790720 | 608..706 | 100 | <- | Minus |
2L | 20791230..20791664 | 173..607 | 100 | <- | Minus |
2L | 20792114..20792268 | 17..172 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:20 Download gff for
BO18849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20789248..20789423 | 1487..1662 | 98 | <- | Minus |
arm_2L | 20789586..20789660 | 1412..1486 | 100 | <- | Minus |
arm_2L | 20789721..20790052 | 1080..1411 | 100 | <- | Minus |
arm_2L | 20790125..20790335 | 869..1079 | 99 | <- | Minus |
arm_2L | 20790391..20790552 | 707..868 | 100 | <- | Minus |
arm_2L | 20790622..20790720 | 608..706 | 100 | <- | Minus |
arm_2L | 20791230..20791664 | 173..607 | 100 | <- | Minus |
arm_2L | 20792114..20792268 | 17..172 | 98 | | Minus |
BO18849.pep Sequence
Translation from 16 to 1678
> BO18849.pep
MLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSPSRRLESRELAKLLAQPH
FRALLRAHDEIGALYEQRLKAAGGSTSQLEIASQRQTGGYLFTEDVLNTK
MPVETIKMVGLRRDPSKPLGLTVELDEFKQLVVARILAGGVIDKQSMLHV
GDVILEVNGTPVRTPDELQVEVSRAKENLTLKIGPNVDEEIKSGRYTCYM
RALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESD
KIGLIPSQELEERRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANC
EFDKAELLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFG
AVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGT
HLQSIKDVINSGRMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKT
IYADRRATGSNRNLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEE
SSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIYAS
FLDH
BO18849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-PD | 615 | CG9326-PD | 68..615 | 1..548 | 2829 | 100 | Plus |
vari-PB | 636 | CG9326-PB | 68..636 | 1..548 | 2797 | 96.3 | Plus |
vari-PE | 611 | CG9326-PE | 68..611 | 1..548 | 2643 | 91.9 | Plus |
vari-PF | 469 | CG9326-PF | 1..469 | 101..548 | 2284 | 95.5 | Plus |
vari-PC | 469 | CG9326-PC | 1..469 | 101..548 | 2284 | 95.5 | Plus |