Clone BO18849 Report

Search the DGRC for BO18849

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:49
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18849.pep: Imported from assembly
Sequenced Size:1678

Clone Sequence Records

BO18849.complete Sequence

1678 bp assembled on 2009-08-12

> BO18849.complete
GAAGTTATCAGTCGACATGCTGAATCCGACCGAGCCGCAGCCAGTGCCAC
TATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCATC
CGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAACTCGCCAAGCT
TCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATAG
GAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCAA
CTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGGA
CGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTGC
GCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATTC
AAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAACA
GAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCCG
TTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAAT
CTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTCG
CTATACTTGCTACATGCGTGCCCTTTTCACATACAATCCATCCGAAGATT
CCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCAAGTCGGGCGACATT
TTGCAGATCATCAACGTAAAGGATCCCAACTGGTGGCAGGCCAAGAACAT
TACTGCCGAATCTGACAAAATTGGACTCATACCATCCCAAGAGCTGGAGG
AGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACTACGTTCACAAGATT
GGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGCAAGACCATGTACCG
ATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCTGCTGCTCTATGAGG
AGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCCTGGTTCTCATCGGT
GTTTCCGGTGTGGGAAGACGTACGCTCAAGAATCGGCTGATCAACAGCGA
TGTGGACAAGTTCGGAGCGGTCATTCCACATACCAGTCGCCCCAAGCGCG
CCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGGACCGCGAGGAAATG
GAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTACGGCGAGCACAATGG
CAATCTGTACGGCACGCATTTGCAGTCCATCAAGGATGTGATCAACAGTG
GGCGCATGTGCATCCTGGATTGTGCACCGAATGCCCTGAAGATCCTGCAC
AACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTGGCAGCGCCTGGCAT
GGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGCCACGGGCTCCAACC
GGAATTTATCTTTTGATCGCCAGAGTTCCATAAGATTCAGCTCCAGACGC
GCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAGGACGACGACCTTGT
CGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAAGTATGAGAAATACT
TCGACATGGTCATCGTGAACGAGGACTTCGATGAGACGTTCCGCCAGGTG
GTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAGTGGGTGCCTGTCAA
CTGGATCTACGCAAGCTTTCTAGACCAT

BO18849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RD 1848 CG9326-PD 202..1845 17..1660 8190 99.9 Plus
vari-RF 1410 CG9326-PF 355..1407 608..1660 5250 99.9 Plus
vari-RC 1410 CG9326-PC 355..1407 608..1660 5250 99.9 Plus
vari-RF 1410 CG9326-PF 1..291 317..607 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RD 2717 CG9326-RD 486..2129 17..1660 8190 99.9 Plus
vari-RF 2379 CG9326-RF 739..1791 608..1660 5250 99.9 Plus
vari-RC 2320 CG9326-RC 680..1732 608..1660 5250 99.9 Plus
vari-RF 2379 CG9326-RF 88..675 20..607 2925 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20791230..20791664 607..173 2175 100 Minus
2L 23513712 2L 20789721..20790052 1411..1080 1660 100 Minus
2L 23513712 2L 20790125..20790335 1079..869 1040 99.5 Minus
2L 23513712 2L 20789250..20789425 1660..1485 880 100 Minus
2L 23513712 2L 20790391..20790558 868..701 840 100 Minus
2L 23513712 2L 20792113..20792267 173..19 760 99.4 Minus
2L 23513712 2L 20790622..20790720 706..608 495 100 Minus
2L 23513712 2L 20789585..20789660 1487..1412 380 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:32:14 has no hits.

BO18849.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-13 17:08:18 Download gff for BO18849.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RD 484..2127 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:20 Download gff for BO18849.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RD 486..2129 17..1662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:48 Download gff for BO18849.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RD 486..2129 17..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:48 Download gff for BO18849.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20789248..20789423 1487..1662 98 <- Minus
2L 20789586..20789660 1412..1486 100 <- Minus
2L 20789721..20790052 1080..1411 100 <- Minus
2L 20790125..20790335 869..1079 99 <- Minus
2L 20790391..20790552 707..868 100 <- Minus
2L 20790622..20790720 608..706 100 <- Minus
2L 20791230..20791664 173..607 100 <- Minus
2L 20792114..20792268 17..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:20 Download gff for BO18849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20789248..20789423 1487..1662 98 <- Minus
arm_2L 20789586..20789660 1412..1486 100 <- Minus
arm_2L 20789721..20790052 1080..1411 100 <- Minus
arm_2L 20790125..20790335 869..1079 99 <- Minus
arm_2L 20790391..20790552 707..868 100 <- Minus
arm_2L 20790622..20790720 608..706 100 <- Minus
arm_2L 20791230..20791664 173..607 100 <- Minus
arm_2L 20792114..20792268 17..172 98   Minus

BO18849.pep Sequence

Translation from 16 to 1678

> BO18849.pep
MLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSPSRRLESRELAKLLAQPH
FRALLRAHDEIGALYEQRLKAAGGSTSQLEIASQRQTGGYLFTEDVLNTK
MPVETIKMVGLRRDPSKPLGLTVELDEFKQLVVARILAGGVIDKQSMLHV
GDVILEVNGTPVRTPDELQVEVSRAKENLTLKIGPNVDEEIKSGRYTCYM
RALFTYNPSEDSLLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESD
KIGLIPSQELEERRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANC
EFDKAELLLYEEVTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFG
AVIPHTSRPKRALEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGT
HLQSIKDVINSGRMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKT
IYADRRATGSNRNLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEE
SSFVQRKYEKYFDMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIYAS
FLDH

BO18849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
vari-PD 615 CG9326-PD 68..615 1..548 2829 100 Plus
vari-PB 636 CG9326-PB 68..636 1..548 2797 96.3 Plus
vari-PE 611 CG9326-PE 68..611 1..548 2643 91.9 Plus
vari-PF 469 CG9326-PF 1..469 101..548 2284 95.5 Plus
vari-PC 469 CG9326-PC 1..469 101..548 2284 95.5 Plus