BO18860.complete Sequence
832 bp assembled on 2009-05-13
GenBank Submission: KX799785
> BO18860.complete
GAAGTTATCAGTCGACATGGCTCAGCCCAGGTATGACGATGGCCTACACG
GCTACGGCATGGACTCCGGAGCCGCAGCAGCGGCCATGTACGATCCACAC
GCCGGTCACCGGCCGCCCGGACTGCAGGGCCTCCCCTCGCACCACTCTCC
GCACATGACGCACGCAGCGGCGGCGGCGGCCACAGTGGGCATGCACGGCT
ACCATTCGGGGGCCGGGGGTCATGGAACACCTAGTCATGTATCGCCGGTC
GGTAATCACCTAATGGGCGCAATACCCGAAGTACACAAACGTGATAAGGA
TGCGATTTATGAACATCCGCTATTCCCGCTTTTGGCGCTGATCTTTGAGA
AGTGCGAATTGGCCACATGTACGCCAAGGGAGCCCGGTGTGCAAGGTGGC
GATGTCTGTTCGTCGGAATCGTTCAACGAGGATATTGCAATGTTCAGTAA
ACAGATAAGATCACAGAAACCCTATTATACCGCAGATCCCGAAGTCGACT
CACTGATGGTGCAAGCAATACAAGTACTTCGGTTTCACCTTTTAGAATTA
GAAAAAGTACACGAGTTATGCGATAACTTCTGTCATCGGTATATATCGTG
TTTAAAGGGTAAAATGCCAATAGATTTAGTGATCGACGAACGGGACACCA
CCAAACCACCGGAGTTGGGATCGGCGAACGGAGAAGGGCGCAGCAACGCC
GACTCCACATCGCACACCGATGGAGCTAGTACACCAGACGTTGTGAGTAC
CCCCTTCGCGGGAGCACATGGTCCTATATTGGCGAGCTACAATGCGGTGG
TGCACCCATGTTCGGCAAGCTTTCTAGACCAT
BO18860.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hth-RI | 801 | CG17117-PI | 1..798 | 17..814 | 3975 | 99.9 | Plus |
hth-RF | 801 | CG17117-PF | 1..798 | 17..814 | 3975 | 99.9 | Plus |
hth-RE | 801 | CG17117-PE | 1..726 | 17..742 | 3615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hth-RI | 6340 | CG17117-RI | 1278..2075 | 17..814 | 3975 | 99.9 | Plus |
hth-RF | 2462 | CG17117-RF | 1278..2075 | 17..814 | 3975 | 99.9 | Plus |
hth-RE | 3868 | CG17117-RE | 1747..2472 | 17..742 | 3615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10605088..10605369 | 312..31 | 1410 | 100 | Minus |
3R | 32079331 | 3R | 10585671..10585928 | 814..557 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 10602786..10602933 | 460..313 | 710 | 98.6 | Minus |
3R | 32079331 | 3R | 10591406..10591460 | 559..505 | 275 | 100 | Minus |
3R | 32079331 | 3R | 10593551..10593604 | 505..452 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:59 has no hits.
BO18860.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:33 Download gff for
BO18860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hth-RF | 1253..2050 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:05 Download gff for
BO18860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hth-RF | 1278..2075 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:57 Download gff for
BO18860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hth-RF | 1278..2075 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:57 Download gff for
BO18860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10585669..10585928 | 557..816 | 99 | <- | Minus |
3R | 10591409..10591459 | 506..556 | 100 | <- | Minus |
3R | 10593551..10593601 | 455..505 | 100 | <- | Minus |
3R | 10602792..10602933 | 313..454 | 99 | <- | Minus |
3R | 10605088..10605368 | 32..312 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:05 Download gff for
BO18860.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6411391..6411650 | 557..816 | 99 | <- | Minus |
arm_3R | 6417131..6417181 | 506..556 | 100 | <- | Minus |
arm_3R | 6419273..6419323 | 455..505 | 100 | <- | Minus |
arm_3R | 6428514..6428655 | 313..454 | 99 | <- | Minus |
arm_3R | 6430810..6431090 | 32..312 | 100 | <- | Minus |
BO18860.pep Sequence
Translation from 16 to 832
> BO18860.pep
MAQPRYDDGLHGYGMDSGAAAAAMYDPHAGHRPPGLQGLPSHHSPHMTHA
AAAAATVGMHGYHSGAGGHGTPSHVSPVGNHLMGAIPEVHKRDKDAIYEH
PLFPLLALIFEKCELATCTPREPGVQGGDVCSSESFNEDIAMFSKQIRSQ
KPYYTADPEVDSLMVQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKM
PIDLVIDERDTTKPPELGSANGEGRSNADSTSHTDGASTPDVVSTPFAGA
HGPILASYNAVVHPCSASFLDH
BO18860.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hth-PF | 266 | CG17117-PF | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PI | 266 | CG17117-PI | 1..266 | 1..266 | 1442 | 100 | Plus |
hth-PE | 266 | CG17117-PE | 1..245 | 1..245 | 1319 | 99.6 | Plus |
hth-PA | 472 | CG17117-PA | 1..242 | 1..242 | 1312 | 100 | Plus |
hth-PC | 487 | CG17117-PC | 1..242 | 1..242 | 1312 | 100 | Plus |