BO18870.complete Sequence
2035 bp assembled on 2010-10-20
GenBank Submission: KX795163
> BO18870.complete
GAAGTTATCAGTCGACATGTTTGAGGAGGCTTTCGGCGATATACAGGAAA
TTATCAATGCCAGCATGGAGTTGAATGGTGGCGCCACCGGCGGAGGCAGT
GTGGCAGGAGCTGTTGGCGGAGGCGGTGCTGCACATCACATATTATCGCA
GTCGACTTCCCTGCCGGTAATGCCGTCGCACATTCCGCTCCACCTGCAGA
ATCAGAATATGAATCAGAATCTGCCCGAGCCAAGTGCAAGAAGTGGTCCC
CACCTGCGTATCGTGGAGGAGCCGACAAGCAATATAATCCGCTTTCGCTA
CAAATGCGAGGGTCGCACCGCCGGTTCGATTCCGGGCATGAACTCCAGCT
CGGAAACGGGCAAGACCTTTCCCACCATCGAAGTGTGCAACTACGATGGA
CCCGTCATCATCGTGGTCTCCTGTGTGACGAGCGACGAGCCCTTCCGCCA
GCATCCCCACTGGCTGGTCAGCAAGGAGGAGGCGGATGCCTGCAAGTCGG
GCATCTACCAAAAGAAATTGCCGCCAGAGGAGCGGCGGCTGGTGCTCCAA
AAAGTGGGCATACAGTGCGCCAAGAAGCTGGAGATGCGCGACTCGCTGGT
GGAGAGGGAAAGGAGAAACATCGATCCCTTCAATGCCAAATTCGATCACA
AGGACCAGATCGACAAGATCAATCGGTATGAGTTGCGCCTCTGCTACCAG
GCCTTCATCACAGTGGGCAACTCAAAAGTGCCCCTGGATCCCATCGTATC
CTCACCGATTTACGGCAAGAGCAGCGAACTGACCATCACCCGGCTGTGCA
GTTGCGCGGCCACTGCGAACGGCGGCGACGAGATCATCATGCTGTGCGAG
AAGATTGCCAAGGACGACATCGAGGTGCGATTCTATGAGACGGACAAGGA
TGGACGGGAGACGTGGTTCGCCAACGCAGAGTTCCAACCCACGGACGTGT
TCAAACAGATGGCCATAGCTTTTAAGACGCCGCGCTACAGGAACACCGAG
ATCACACAAAGTGTTAATGTGGAGCTGAAACTAGTGAGACCCTCGGATGG
AGCGACGAGTGCCCCACTGCCGTTCGAGTACTACCCGAATCCAGAACTCC
TAACCAAACACAATCGCCGTGTTGCCCAAAAAACAGTTGAAAGCCTAAAG
CGCAGTCTCATGAGCACCAATTTACATCCATCCAAGCAGGTTAAAACCTC
CAGCCAGTATACGATATTTTCCAAGCCACAAATTGCGACCACAACACCGC
AGACACAGGTGTCGCCTGGTATGCCTTTGATGTTTCCCGGCGGAAGTCCC
AATTTTGTGCAGGATATCAAGATGGAGAATGGATTCATGGATGTGGATAG
CCAGAGTAGCCAGTGTCCATCAGTGGAACGCAATTTCGCTTCGCCTCGAT
CCAACTGCAGTACAGTGGATAGTATTCCGCCGATGCAAATGGGGCAAAAT
CAAACTCATCTTTATTTGCCAGATGCCACAAACTTCACATTTAATGGGAA
TTTCGCATCGCCTTCGTCCAATTGCAGTACAGTGGATAGCATTCCGCCGT
TTCAAATCGGACAGAGGAATAACCATATGTATCTGCCGGAGAATTCAAAC
TTTCCGGTAAACGGCTGTAGTCCTACCCATTTCAGTGGTGGCTCTATGAC
ACCAATCAATAATAACAACAATGTACTAATTAATAACAATAACAATGACT
TTTTAAGTCAGAAAATGAGTGCCATAAGCATACCGCCACAAGGAAATTTT
GGCATTAAACAGGTATATCAACAGACTCAGCAGTTCCTGCCGCAATTGCA
GCCAGAGTCCATTCCATATCTGGCCCAATCCCATCCAGAACAGTCGCAGT
ACCAACAGCAACAGCAGCCACAGGAGCAGCAACCTCCAGCAGATGAACCC
ACCCAATCGTTTAGTGATCTAATTTCCAGCAGCATAGGCATGGCGCCCAT
TGACACCAGCGAACTTATCCAGGACATTGAGGCAGAACTCAATAGCTTAG
GAATTCAGCCATTCAAAGCAAGCTTTCTAGACCAT
BO18870.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dif-RD | 2004 | CG6794-PD | 1..2001 | 17..2017 | 9990 | 100 | Plus |
| Dif-RB | 2004 | CG6794-PB | 1..2001 | 17..2017 | 9990 | 100 | Plus |
| Dif-RA | 2004 | CG6794-PA | 1..2001 | 17..2017 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:16:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dif-RD | 2595 | CG6794-RD | 325..2325 | 17..2017 | 9990 | 100 | Plus |
| Dif-RB | 2483 | CG6794-RB | 213..2213 | 17..2017 | 9990 | 100 | Plus |
| Dif-RA | 2835 | CG6794-RA | 565..2565 | 17..2017 | 9990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17413518..17414332 | 2017..1203 | 4060 | 99.9 | Minus |
| 2L | 23513712 | 2L | 17418488..17419078 | 635..45 | 2955 | 100 | Minus |
| 2L | 23513712 | 2L | 17417989..17418375 | 1021..635 | 1935 | 100 | Minus |
| 2L | 23513712 | 2L | 17415280..17415390 | 1203..1093 | 555 | 100 | Minus |
| 2L | 23513712 | 2L | 17417571..17417646 | 1094..1019 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2388 | 1783..1883 | 159 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6920 | 1758..1902 | 154 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2365..2437 | 1839..1909 | 144 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2421 | 1769..1883 | 143 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6817 | 1826..1892 | 143 | 70.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1132 | 1832..1892 | 140 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6809 | 1826..1902 | 138 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6838 | 1756..1892 | 136 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6788 | 1839..1902 | 127 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1170 | 1842..1917 | 127 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6815 | 1839..1883 | 126 | 75.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2728..2800 | 1819..1891 | 121 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2372 | 1847..1892 | 118 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1113..1160 | 1839..1886 | 114 | 70.8 | Plus |
BO18870.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:15 Download gff for
BO18870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dif-RB | 215..2209 | 23..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:24 Download gff for
BO18870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dif-RA | 571..2565 | 23..2019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:54 Download gff for
BO18870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dif-RA | 571..2565 | 23..2019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:54 Download gff for
BO18870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17415281..17415388 | 1095..1202 | 100 | <- | Minus |
| 2L | 17417571..17417646 | 1019..1094 | 100 | <- | Minus |
| 2L | 17413515..17414332 | 1203..2019 | 99 | <- | Minus |
| 2L | 17417992..17418374 | 636..1018 | 100 | <- | Minus |
| 2L | 17418488..17419078 | 45..635 | 100 | <- | Minus |
| 2L | 17420066..17420087 | 23..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:24 Download gff for
BO18870.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17413515..17414332 | 1203..2019 | 99 | <- | Minus |
| arm_2L | 17415281..17415388 | 1095..1202 | 100 | <- | Minus |
| arm_2L | 17417571..17417646 | 1019..1094 | 100 | <- | Minus |
| arm_2L | 17417992..17418374 | 636..1018 | 100 | <- | Minus |
| arm_2L | 17418488..17419078 | 45..635 | 100 | <- | Minus |
| arm_2L | 17420066..17420087 | 23..44 | 100 | | Minus |
BO18870.pep Sequence
Translation from 16 to 2035
> BO18870.pep
MFEEAFGDIQEIINASMELNGGATGGGSVAGAVGGGGAAHHILSQSTSLP
VMPSHIPLHLQNQNMNQNLPEPSARSGPHLRIVEEPTSNIIRFRYKCEGR
TAGSIPGMNSSSETGKTFPTIEVCNYDGPVIIVVSCVTSDEPFRQHPHWL
VSKEEADACKSGIYQKKLPPEERRLVLQKVGIQCAKKLEMRDSLVERERR
NIDPFNAKFDHKDQIDKINRYELRLCYQAFITVGNSKVPLDPIVSSPIYG
KSSELTITRLCSCAATANGGDEIIMLCEKIAKDDIEVRFYETDKDGRETW
FANAEFQPTDVFKQMAIAFKTPRYRNTEITQSVNVELKLVRPSDGATSAP
LPFEYYPNPELLTKHNRRVAQKTVESLKRSLMSTNLHPSKQVKTSSQYTI
FSKPQIATTTPQTQVSPGMPLMFPGGSPNFVQDIKMENGFMDVDSQSSQC
PSVERNFASPRSNCSTVDSIPPMQMGQNQTHLYLPDATNFTFNGNFASPS
SNCSTVDSIPPFQIGQRNNHMYLPENSNFPVNGCSPTHFSGGSMTPINNN
NNVLINNNNNDFLSQKMSAISIPPQGNFGIKQVYQQTQQFLPQLQPESIP
YLAQSHPEQSQYQQQQQPQEQQPPADEPTQSFSDLISSSIGMAPIDTSEL
IQDIEAELNSLGIQPFKASFLDH
BO18870.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dif-PD | 667 | CG6794-PD | 1..667 | 1..667 | 3510 | 100 | Plus |
| Dif-PB | 667 | CG6794-PB | 1..667 | 1..667 | 3510 | 100 | Plus |
| Dif-PA | 667 | CG6794-PA | 1..667 | 1..667 | 3510 | 100 | Plus |
| Dif-PC | 987 | CG6794-PC | 1..363 | 1..363 | 1893 | 99.2 | Plus |
| dl-PB | 677 | CG6667-PB | 7..341 | 20..373 | 725 | 45.4 | Plus |
