BO18874.complete Sequence
1288 bp assembled on 2009-05-13
GenBank Submission: KX799676
> BO18874.complete
GAAGTTATCAGTCGACATGTTACTACACGAGAGTGCCGCCAGCATGGAAC
AGAGTATGCCCGAGAACCTCAGCACTCACATGTACGGCGAGTGTGAAGTG
AATCCAACGCTGGCAAAGTGTCCCGATCCAGTGAATGTCGATCATGAGCT
GCCCACCAAAGAATCCTGTGCCTCGACTACCATAGTCAGTACGTCGCCAA
CCAGCGCCACGAGCACCACCAAAGTCAAGCTGAGCTTCAGTGTGGATCGT
CTGTTGGGCTCGGAACCCGAGGAATCCCACCGGCAGAGCTCCTCCTCGCC
CTCGACCAAGTCATGCTGCGATGGCAGCATTCTAGCCTGCTGCTCCTTCC
CCCACTGCTTCAGCCAGGCGAATGCCGAATCCCGTAGGTTTGGACATGCC
ACGCTTCCGCCCACTTTCACACCCACTTCATCGCACACGTACCCCTTCGT
GGGTCTGGATAAGCTGTTCCCTGGCCCCTATATGGATTACAAATCAGTGC
TCAGACCGACGCCAATTCGGGCAGCAGAACACGCCGCACCCACTTATCCC
ACGCTGGCTACCAATGCGCTCCTCCGCTTCCATCAACATCAGAAGCAGCA
GCACCAGCAGCATCATCATCATCAGCACCATCCCAAACACCTCCATCAGC
AGCACAAGCCCCCGCCACACAACTCGACGACAGCCTCGGCGCTACTGGCG
CCGCTCCACAGCCTCACGAGCCTCCAGCTGACGCAACAGCAGCAGCGATT
TCTGGGCAAGACGCCGCAGCAGCTCCTGGACATAGCGCCCACCTCGCCCG
CCGCCGCCGCCGCTGCCACATCCCAGAACGGTGCACATGGACATGGAGGT
GGCAATGGCCAGGGCAACGCCTCAGCCGGAAGCAATGGGAAGCGCAAGCG
ATCCTGGTCTCGCGCCGTCTTCTCGAATCTGCAGCGCAAGGGCCTGGAGA
TTCAGTTCCAGCAGCAGAAGTACATCACCAAGCCAGATCGCCGCAAGCTG
GCGGCACGACTGAATCTCACCGACGCTCAGGTCAAGGTGTGGTTCCAGAA
CCGTCGCATGAAGTGGCGGCACACGCGCGAGAATCTGAAGAGTGGCCAGG
AGAAGCAGCCGAGTGCAGTACCCGAATCCGGAGGTGTCTTCAAGACATCC
ACGCCATCCGGTGATGGTACGCCCCAGGAGGCACTCGACTACAGTTCCGA
TAGCTGCTCCAGTGTGGATTTGAGCGAGCAGGCCGACGAAGATGATAATA
TTGAAATCAATGTGGTGGAGGCAAGCTTTCTAGACCAT
BO18874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| H2.0-RA | 1257 | CG11607-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
| Dbx-RC | 2226 | CG42234-PC | 1315..1470 | 914..1069 | 210 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| H2.0-RA | 1662 | CG11607-RA | 210..1463 | 17..1270 | 6270 | 100 | Plus |
| Dbx-RC | 2488 | CG42234-RC | 1423..1578 | 914..1069 | 210 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6018677..6019193 | 533..17 | 2585 | 100 | Minus |
| 2L | 23513712 | 2L | 6013598..6014097 | 1032..533 | 2500 | 100 | Minus |
| 2L | 23513712 | 2L | 6013258..6013499 | 1270..1029 | 1210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 21:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6914 | 578..773 | 221 | 61.5 | Plus |
BO18874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:40 Download gff for
BO18874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 211..1459 | 22..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:55 Download gff for
BO18874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 215..1463 | 22..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:06 Download gff for
BO18874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| H2.0-RA | 215..1463 | 22..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:06 Download gff for
BO18874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6013256..6013497 | 1031..1272 | 99 | <- | Minus |
| 2L | 6013600..6014096 | 534..1030 | 100 | <- | Minus |
| 2L | 6018677..6019188 | 22..533 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:55 Download gff for
BO18874.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6013256..6013497 | 1031..1272 | 99 | <- | Minus |
| arm_2L | 6013600..6014096 | 534..1030 | 100 | <- | Minus |
| arm_2L | 6018677..6019188 | 22..533 | 100 | | Minus |
BO18874.pep Sequence
Translation from 16 to 1288
> BO18874.pep
MLLHESAASMEQSMPENLSTHMYGECEVNPTLAKCPDPVNVDHELPTKES
CASTTIVSTSPTSATSTTKVKLSFSVDRLLGSEPEESHRQSSSSPSTKSC
CDGSILACCSFPHCFSQANAESRRFGHATLPPTFTPTSSHTYPFVGLDKL
FPGPYMDYKSVLRPTPIRAAEHAAPTYPTLATNALLRFHQHQKQQHQQHH
HHQHHPKHLHQQHKPPPHNSTTASALLAPLHSLTSLQLTQQQQRFLGKTP
QQLLDIAPTSPAAAAAATSQNGAHGHGGGNGQGNASAGSNGKRKRSWSRA
VFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKW
RHTRENLKSGQEKQPSAVPESGGVFKTSTPSGDGTPQEALDYSSDSCSSV
DLSEQADEDDNIEINVVEASFLDH
BO18874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| H2.0-PA | 418 | CG11607-PA | 1..418 | 1..418 | 2222 | 100 | Plus |
| Dbx-PC | 741 | CG42234-PC | 99..494 | 16..355 | 249 | 28.1 | Plus |
| Hmx-PE | 592 | CG43748-PE | 370..524 | 190..351 | 210 | 34 | Plus |
| Hmx-PC | 592 | CG43748-PC | 370..524 | 190..351 | 210 | 34 | Plus |
| Hmx-PD | 718 | CG43748-PD | 370..524 | 190..351 | 210 | 34 | Plus |
