BO18877.complete Sequence
1207 bp assembled on 2009-05-13
GenBank Submission: KX796224
> BO18877.complete
GAAGTTATCAGTCGACATGCTTTCCATGCAAGAGCTAATGGATATGCGGA
TGCAGCAGCAGCTGGCCCACGAGATCTACCGCCAGCAGATCATGCAGCGG
ATTCCAGATCCCTTTCCATCGATGTTACCTTTCAACATGCCCCACCAGCA
GCCGCACATGATGCTGCCCAGTCGTCCCACCCTGCCCGGCGTGGAGGCCA
AGTTGGAGAACAACGATTTGTGGCAACAGTTCCATAAAATCGGCACCGAG
ATGATCATCACAAAGAGCGGCCGACGCATGTTCCCCTCGATGCGAGTTTC
CCTCAGCGGACTGGAGGAGGAGGCCAGCTATTGCGTACTCCTCGAGATGG
TGCCCATTGGCGATTGCCGCTACAAGTTCTCCGGTTCCCAGTGGGTTCCG
GCCGGAGGAGCCGAGCCCCAGAGTCCGCAGCGCATGTATCTGCATCCGGA
CAGTCCGGCGACCGGTGCCCATTGGCAATCCCAGGCATTGCTCTTCAACA
AGGTCAAACTGACCAACAATACACTGGACAGCAGCGGACATATCGTTTTG
GCCAGCATGCATAAGTACCAGCCACGCCTGCACATCATCCGCAGCAGCGA
GCTCACCCAACTTCCATGGGCTCCTCAGCAGGCGTTCGTTTTCCCGGAGA
CGGAGTTCGTAGCTGTCACAGCCTATCAGAACGATCGCATCACCAAATTG
AAGATCGATAACAATCCGTTCGCTAAGGGTTTCCGCGAGTCGGGTCAATC
CCGCTGCAAAAGGAAGCTGAACAGCAGCGGAAACTCGACGCTGGAGTCGG
AGGATGATGGCTCCAGTGTGAGCAGCTGCGATTCTCCGCAGGCGAAGCGC
CAGCGCCAGGATTTTGAGCAGGACTCAACGGGTAGTGTTTCGCCAGCTTA
CTATGGAGCAACTCATCCAGTTGCCAATCCTATGTCGCCGTATCTCCGCC
ATCACTTGAGCTATGGACCCAGTGGAGCTGCCGGATTGCCGCCCAGCATT
GCAGCTGCCTATTTTGGTGGAGTTCCTCCGCAGATTCTGCCAATGCCACC
AGCCACATATGCACCAACTGTCGCGCCTGTTAGTCCTGTGGCCTCGCAAC
CCGTTGGCTCCAGCACACCCACAACATCACCAAGGCCTTCAACCTCAACG
AAAAGAAATAGCTTCAGCATTTCAGCCATTTTGGCCTATGCAAGCTTTCT
AGACCAT
BO18877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc1-RA | 1176 | CG5133-PA | 1..1173 | 17..1189 | 5850 | 99.9 | Plus |
Doc1-RB | 1071 | CG5133-PB | 1..1068 | 122..1189 | 5325 | 99.9 | Plus |
Doc3-RA | 1275 | CG5093-PA | 175..750 | 191..766 | 1500 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc1-RA | 1526 | CG5133-RA | 161..1338 | 12..1189 | 5860 | 99.8 | Plus |
Doc1-RB | 1339 | CG5133-RB | 68..1151 | 106..1189 | 5405 | 99.9 | Plus |
Doc3-RA | 1671 | CG5093-RA | 297..872 | 191..766 | 1500 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9044342..9044854 | 677..1189 | 2550 | 99.8 | Plus |
3L | 28110227 | 3L | 9043387..9043655 | 273..541 | 1345 | 100 | Plus |
3L | 28110227 | 3L | 9042027..9042198 | 102..273 | 860 | 100 | Plus |
3L | 28110227 | 3L | 9005774..9006029 | 273..528 | 860 | 89.1 | Plus |
3L | 28110227 | 3L | 9014708..9014976 | 541..273 | 700 | 84 | Minus |
3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 690 | 100 | Plus |
3L | 28110227 | 3L | 9041535..9041630 | 12..107 | 465 | 99 | Plus |
3L | 28110227 | 3L | 9013541..9013624 | 760..677 | 270 | 88.1 | Minus |
3L | 28110227 | 3L | 9005554..9005634 | 191..271 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 225 | 77.5 | Plus |
3L | 28110227 | 3L | 9018801..9018884 | 107..24 | 225 | 84.5 | Minus |
3L | 28110227 | 3L | 9014492..9014622 | 679..549 | 220 | 77.9 | Minus |
3L | 28110227 | 3L | 9006361..9006450 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:12:14 has no hits.
BO18877.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:35 Download gff for
BO18877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc1-RA | 164..1336 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:42 Download gff for
BO18877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc1-RA | 166..1338 | 17..1191 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:11 Download gff for
BO18877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc1-RA | 166..1338 | 17..1191 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:11 Download gff for
BO18877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9043388..9043655 | 274..541 | 100 | -> | Plus |
3L | 9043724..9043861 | 542..679 | 100 | -> | Plus |
3L | 9041540..9041630 | 17..107 | 100 | -> | Plus |
3L | 9042033..9042198 | 108..273 | 100 | -> | Plus |
3L | 9044345..9044854 | 680..1191 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:42 Download gff for
BO18877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9034640..9034730 | 17..107 | 100 | -> | Plus |
arm_3L | 9035133..9035298 | 108..273 | 100 | -> | Plus |
arm_3L | 9036488..9036755 | 274..541 | 100 | -> | Plus |
arm_3L | 9036824..9036961 | 542..679 | 100 | -> | Plus |
arm_3L | 9037445..9037954 | 680..1191 | 99 | | Plus |
BO18877.pep Sequence
Translation from 16 to 1207
> BO18877.pep
MLSMQELMDMRMQQQLAHEIYRQQIMQRIPDPFPSMLPFNMPHQQPHMML
PSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLE
EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATG
AHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSELTQLP
WAPQQAFVFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRK
LNSSGNSTLESEDDGSSVSSCDSPQAKRQRQDFEQDSTGSVSPAYYGATH
PVANPMSPYLRHHLSYGPSGAAGLPPSIAAAYFGGVPPQILPMPPATYAP
TVAPVSPVASQPVGSSTPTTSPRPSTSTKRNSFSISAILAYASFLDH
BO18877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc1-PA | 391 | CG5133-PA | 1..391 | 1..391 | 2063 | 100 | Plus |
Doc1-PB | 356 | CG5133-PB | 1..356 | 36..391 | 1883 | 100 | Plus |
Doc2-PA | 469 | CG5187-PA | 1..469 | 1..393 | 1178 | 54.4 | Plus |
Doc3-PA | 424 | CG5093-PA | 1..422 | 1..393 | 1164 | 59.1 | Plus |
bi-PE | 970 | CG3578-PE | 305..545 | 43..276 | 621 | 48.5 | Plus |