BO18884.complete Sequence
1708 bp assembled on 2010-10-20
GenBank Submission: KX799856
> BO18884.complete
GAAGTTATCAGTCGACATGCATACATCGGATATCAGCATGACCCAGGATC
AGGATGTGAGCACTTGTCGCCTGTGCCACCATAATACGGATCCCAACTCG
CTAAACATTTTCGATGACACCGTGCAGTTTTGCAAGGATGTGTCCATTGC
AGAGGTTTCCAAGAGTCTCTGGAGCGTTCAGTACGATCGCAACGAATGTT
TGTCGGAGCTCATTTGCTCAAGGTGTCTGGAGATCCTCGAAGAGGCATTC
GAGCTGCGAAAAGGAATGCAGGAGCGGGAACAGTCCCTGCAGGAGCAGCT
GAAGGAGATGATTAAAGATCATCCGAAGCACCGTCCAGGCCTGAATGGCA
ACCCCGGAGTATTCGTACCCGAGGAGGGCTGCATTATTGTGGAAGTTGAT
CCAGAGAATCTGGCAGAGAGCAGTGAAGAGGAATTCGCACTCGGCTCCGA
TGGGGAGTACGAAAACTATGACGACGATGATGAGGAGGAGGAGGAAGACT
ACGATGAGGAGGACGAGGAAGATGGCCAGAACGGCGAAGACGTCGACATG
CCACTGGGCATGGATGCGGCCCAGATGGCGGCTCAACAGTCCGTTGCCAA
CAACGCCAACACCACGGAGGCACGGCCAAAGCGAGCGTTCCTCTGTCAAT
ACTGTGATCTTGGGTTCACTCTGCCCGCCGAGTGTCAAGAGCACGAGCTG
GCTGCACACGATCCCAACGCACCGTACTGCTGCAACTTTTGCAACATCAA
GCTGGTTACCCGGCCTGCTTTGATTTCGCACATAAAGACACTGCATGATC
CGGACCGTCCGTATGTGTGTGCTCACTGTCGGAAGGGTTTTGTGCGCCGC
TCCGATCTTAAAAAGCACACAATCGTGCACACTGGCGTGAGGCCCTTCAC
ATGCAACGTTTGCTCCAAGAGTTTCTCGCGGAATACAAATCTGACCAAGC
ACATGCGCATTCATAGCGGTGTCAAGCCCTTTGTTTGCCAGCAGTGTCCG
CGATCCTTCCAGACGGCTGTGGAAATGATGCGCCACACACGTTCGCACGG
AGAGGTAAAGGCTTTCCAATGTGGACGCTGTCCCTACTCGTTTTCGCGCA
GGGATAAGCTAATAGCCCACCAGCAAGTCCATACCAGGCGGGACATGGAG
CAGCAGCAGCAAATGGGTCTAATTCCCCCGATGGAGGGTGATCTGCAGCA
GCAGGCGTTGCAGGCTAAACAAAAGGCTGCCGCACAAACCAAAAACTCAC
GCTATTACCACTGTGATGTCTGCGATCGAACTTTCCAACGGGAGAGGGAC
CTGCAACGCCATCAAGCTCTTCACATGGACTCGCTGTTCGCCTGCAAGAC
ATGTAATCAAGGTTTCAACCGACGCGAGCAACTGCAGCGCCATGAGCTAG
AGGCTCATGGTCCCAGCTTTACGTGCGGAATCTGTTGCATTAGCTTCCTG
CATCAAATTGAGCTGGAGAATCACCTCAAAGTCCATCAGTTGCAGCACAA
GATGGCCCAGCGGGCTCAAGAGGCTGCTATTTTACCCCTAAAAATGGCCG
AAAAGGCTCCAGTGGCTATGACGGCTCCGCTAGTTCAGGATCCCCAGCTA
GTGCGTCCCTCGGCAGCGGAACTGTCGTTCTACAGCAACATGATTCCCAC
AATGAATCTGGGCTTCTACAGCGAGACTCGTCCCGAGGAAGCAAGCTTTC
TAGACCAT
BO18884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu2-RB | 1677 | CG9233-PB | 1..1674 | 17..1690 | 8355 | 99.9 | Plus |
| fu2-RA | 1677 | CG9233-PA | 1..1674 | 17..1690 | 8355 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu2-RB | 2149 | CG9233-RB | 123..1796 | 17..1690 | 8355 | 99.9 | Plus |
| fu2-RA | 1984 | CG9233-RA | 123..1796 | 17..1690 | 8355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8464830..8466341 | 179..1690 | 7545 | 99.9 | Plus |
| 2L | 23513712 | 2L | 8464610..8464774 | 17..181 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:17:39 has no hits.
BO18884.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:18 Download gff for
BO18884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 121..1794 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:33 Download gff for
BO18884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 123..1796 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:27 Download gff for
BO18884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fu2-RA | 123..1796 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:27 Download gff for
BO18884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8464610..8464774 | 17..181 | 100 | -> | Plus |
| 2L | 8464833..8466341 | 182..1692 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:33 Download gff for
BO18884.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8464610..8464774 | 17..181 | 100 | -> | Plus |
| arm_2L | 8464833..8466341 | 182..1692 | 99 | | Plus |
BO18884.pep Sequence
Translation from 16 to 1708
> BO18884.pep
MHTSDISMTQDQDVSTCRLCHHNTDPNSLNIFDDTVQFCKDVSIAEVSKS
LWSVQYDRNECLSELICSRCLEILEEAFELRKGMQEREQSLQEQLKEMIK
DHPKHRPGLNGNPGVFVPEEGCIIVEVDPENLAESSEEEFALGSDGEYEN
YDDDDEEEEEDYDEEDEEDGQNGEDVDMPLGMDAAQMAAQQSVANNANTT
EARPKRAFLCQYCDLGFTLPAECQEHELAAHDPNAPYCCNFCNIKLVTRP
ALISHIKTLHDPDRPYVCAHCRKGFVRRSDLKKHTIVHTGVRPFTCNVCS
KSFSRNTNLTKHMRIHSGVKPFVCQQCPRSFQTAVEMMRHTRSHGEVKAF
QCGRCPYSFSRRDKLIAHQQVHTRRDMEQQQQMGLIPPMEGDLQQQALQA
KQKAAAQTKNSRYYHCDVCDRTFQRERDLQRHQALHMDSLFACKTCNQGF
NRREQLQRHELEAHGPSFTCGICCISFLHQIELENHLKVHQLQHKMAQRA
QEAAILPLKMAEKAPVAMTAPLVQDPQLVRPSAAELSFYSNMIPTMNLGF
YSETRPEEASFLDH
BO18884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fu2-PB | 558 | CG9233-PB | 1..558 | 1..558 | 3011 | 100 | Plus |
| fu2-PA | 558 | CG9233-PA | 1..558 | 1..558 | 3011 | 100 | Plus |
| Meics-PB | 571 | CG8474-PB | 171..570 | 135..493 | 392 | 26 | Plus |
| Meics-PA | 583 | CG8474-PA | 183..582 | 135..493 | 392 | 26 | Plus |
| CG5245-PA | 501 | CG5245-PA | 18..354 | 152..490 | 373 | 29.9 | Plus |
