Clone BO18886 Report

Search the DGRC for BO18886

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG6885-RA
Protein status:BO18886.pep: Imported from assembly
Sequenced Size:1168

Clone Sequence Records

BO18886.complete Sequence

1168 bp assembled on 2009-05-13

GenBank Submission: KX795335

> BO18886.complete
GAAGTTATCAGTCGACATGGCCCGCCGAACACAATCGCGTTATATCTTTG
ACATCGAGGATAACTTCCGTGTGTTTCGCCACCAGTTTTTCGTCAACGGT
GCAAGGAGAGCGGATTGCACAACCTGTGAAAGTCGAGTGCCAGTCAGCGA
ACCATACCATCATCATTGGCGAAATGATATCGAGAACAATAGAAGCCATT
GCATTCAAATTGGTTCTGATGAAAAGGATATCCTGAAGAGGATCGAGGAC
CAGGCCATCGAAGAGTTTATCTTGTGTGATGGAAGCATTGCGGCCAGGAC
CAACGACTTTCTTCTGGATGCTGGGATGGATGCAGTTCCGCAACTGCTGC
GATTTTTAAGTTTTGGTACAGAAAAATTGGAGACCACAGTTGGATTTTAC
GTGGATGTGAAAAAGGAGCGAATGTACTACGAAAGCAGTCCGTTAAATAT
CGAAAACCATTTCGATATTGGTGAGGCGGTGGACATGATATTCTCCATGC
TGCTGGAGAAGATCAGCAACTACGTGCTGCTCCATCAGAAGGTTCCACTG
GAGGCGTGTGTCATCAGAAGGATGAAGGTGACGGTCAAGAGATTTTGCGT
CTCGCCTAAGAGCAATTCTCTTAAACTTCCTTTGCAGTACCGAGTAAAAA
ACGCAACAGAAGTCATTGGAAATGGAAGTAATAAGCATTCCTCCGATTTA
GCACAACTTTCTGAAACTTATATAAACCAAAAGGACCAAAATCAACACAT
TCCGGCAACTCTAAAAATAAACCTGTACACTTTTCGGGTCTGCAGCACTT
CCAAGGAATTATTTGCAGTACCATATTTGCTCCGAGGCGATGATGTCGAA
AACACACCCACCTTCATCATTCAAACGGACGTAGTTGGTGACTTTCGGGG
CTTACTTGAGATCCGAAACATAAGAAAGTTCCTGCGCGTGGATACCCACG
ATCGAGTGTTCGAGTGCCGCCAGTGTCAATCCCACTTTGTGGACCGGGTG
CACCTGGCGCTCCACAAACAAATCGCCTGTGGCAGGAACTTTATGGTGTG
GCACATGGACAAGGACGCCATCGAGTTGCACGAGAATTGCCTGCCTCTGC
CAAAGGAGTACTTCAAATATGAATGGGTCGGATTGGCAAGCAAGCGAATT
GCAAGCTTTCTAGACCAT

BO18886.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-RA 1137 CG6885-PA 1..1134 17..1150 5670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-RA 1212 CG6885-RA 21..1155 16..1150 5675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18744508..18745642 16..1150 5675 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:09:24 has no hits.

BO18886.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:44 Download gff for BO18886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 16..1149 17..1152 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:54 Download gff for BO18886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 22..1155 17..1152 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:10 Download gff for BO18886.complete
Subject Subject Range Query Range Percent Splice Strand
CG6885-RA 22..1155 17..1152 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:10 Download gff for BO18886.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18744509..18745642 17..1152 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:54 Download gff for BO18886.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18737609..18738742 17..1152 99   Plus

BO18886.pep Sequence

Translation from 16 to 1168

> BO18886.pep
MARRTQSRYIFDIEDNFRVFRHQFFVNGARRADCTTCESRVPVSEPYHHH
WRNDIENNRSHCIQIGSDEKDILKRIEDQAIEEFILCDGSIAARTNDFLL
DAGMDAVPQLLRFLSFGTEKLETTVGFYVDVKKERMYYESSPLNIENHFD
IGEAVDMIFSMLLEKISNYVLLHQKVPLEACVIRRMKVTVKRFCVSPKSN
SLKLPLQYRVKNATEVIGNGSNKHSSDLAQLSETYINQKDQNQHIPATLK
INLYTFRVCSTSKELFAVPYLLRGDDVENTPTFIIQTDVVGDFRGLLEIR
NIRKFLRVDTHDRVFECRQCQSHFVDRVHLALHKQIACGRNFMVWHMDKD
AIELHENCLPLPKEYFKYEWVGLASKRIASFLDH

BO18886.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6885-PA 378 CG6885-PA 1..378 1..378 1999 100 Plus
CG7271-PA 427 CG7271-PA 7..384 7..377 470 27.9 Plus
term-PA 428 CG4216-PA 8..385 7..377 467 27.9 Plus