Clone BO18887 Report

Search the DGRC for BO18887

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG11275-RA
Protein status:BO18887.pep: Imported from assembly
Sequenced Size:1285

Clone Sequence Records

BO18887.complete Sequence

1285 bp assembled on 2009-08-24

GenBank Submission: KX794140

> BO18887.complete
GAAGTTATCAGTCGACATGAGCATCTCGGCGGTGGATCGCAAAGAGCCGG
GCAGTGTGAGCAGCGGTCTGGGTAGGCGATACGGGCAGCTGCTCCGTGGA
GCCAAGTACACAGATTGCGTGTTCCACGTGTGCGAGGAGCAAGTGAAATG
CCACAAGCTCATCCTGAGCTCCGCCAGTCCCGTTTTCGAGGCAATGTTCT
TTGGTCCCATGCAAAACAACGAGCCCGAGCCGGAAATCGAAATCCACGAC
ATAAGCTCTGCCATCTTCAAGGTGCTGGTGGAGTACATCTACACGGGCGT
CGTTGACTACAATGGCCTGGAGCTGGTGGCCTGCATTGAGCTGTACTACG
CCGCTGAGAAGTATCTGCTGGAGGAGCTGATCGCCGACACGCTGATGGTT
ATCACCCGCAAGCTGCGATTTGCCAATATCTTGCCCGCTCTAGAGCTAAG
TGTTTGCATGGGCCTCGACGGGTTGCTGGAGGTCTGCATGACCTTTTTCA
TGCGATGCTGTGTTAATAATGGACAGTATATGAGCCACCTTAAGGAGCAC
TATGTGCACGTGTCCAAGGAGTGTGTGAAGGCCATAATAGCGGCGTGCAA
GGAACCGCACAAGTTACTCATCTGGTATGTTTATGAGTGGACACGACAGG
AGTGCGAGCAGTTGGGTCTGGGTCCCAGCGATGCCGACTTAGTAGTGCAC
GACTTGGGTGGCAAAACAAGCGACTGGCCTGCGGCTTCGGGTGCTAGTGA
TTTGGAATCACCTGCCCTAACTCCGGTGGTTTTGGTGGAGCGCTGCTATT
ACAAGGCCTGCAGGCCCTTTACAGTGGATGCAGAAACTCCGCTGTTTCGC
TTGCGTCTAAAGTGCTCTAGATTTATCTCCTTGATGGGCTTGGTCCTGAA
CAGCAGGCTGACTCCCAACCTATTGGGTCACGTCCAGCAGCTGGAGTACC
GCGAATCGCTGCGGCTGGACCTTTGCGAGGTGCCCGCTGAAAGCGAGGGT
CCGGCCACGTCGCCCGTATGGAGTCACGTTGTCCAGAGCCAGAATACCAA
GTACAACTGCAACCTGCATCTTGGCTGGCGACGCGAAGAGGCCTGTGTGC
TGAATCCGGAGCTGACCTATGAGCTGCAGATCCGCTGGGACAGCAGTGCT
TACGGCGCCGAGTATCCGTGCAGCCTGCAGTCCTGCCAGGCGGACGGAAT
TCGGTTCACTGACGAGGACAGCTTCAGCGGAAGTCTCGTCAAGGGACTGC
GCTATGCCAACCTGGTGGCAAGCTTTCTAGACCAT

BO18887.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-RA 1254 CG11275-PA 1..1251 17..1267 6255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-RA 1664 CG11275-RA 298..1548 17..1267 6255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22181276..22182526 17..1267 6255 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:32:36 has no hits.

BO18887.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:49 Download gff for BO18887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 300..1550 17..1269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:36 Download gff for BO18887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 298..1548 17..1269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:03 Download gff for BO18887.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 298..1548 17..1269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:03 Download gff for BO18887.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22181276..22182526 17..1269 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:36 Download gff for BO18887.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18068781..18070031 17..1269 99   Plus

BO18887.pep Sequence

Translation from 16 to 1285

> BO18887.pep
MSISAVDRKEPGSVSSGLGRRYGQLLRGAKYTDCVFHVCEEQVKCHKLIL
SSASPVFEAMFFGPMQNNEPEPEIEIHDISSAIFKVLVEYIYTGVVDYNG
LELVACIELYYAAEKYLLEELIADTLMVITRKLRFANILPALELSVCMGL
DGLLEVCMTFFMRCCVNNGQYMSHLKEHYVHVSKECVKAIIAACKEPHKL
LIWYVYEWTRQECEQLGLGPSDADLVVHDLGGKTSDWPAASGASDLESPA
LTPVVLVERCYYKACRPFTVDAETPLFRLRLKCSRFISLMGLVLNSRLTP
NLLGHVQQLEYRESLRLDLCEVPAESEGPATSPVWSHVVQSQNTKYNCNL
HLGWRREEACVLNPELTYELQIRWDSSAYGAEYPCSLQSCQADGIRFTDE
DSFSGSLVKGLRYANLVASFLDH

BO18887.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-PA 417 CG11275-PA 1..417 1..417 2211 100 Plus
BTBD9-PB 722 CG1826-PB 28..219 18..210 156 26.1 Plus
BTBD9-PA 722 CG1826-PA 28..219 18..210 156 26.1 Plus