Clone BO18888 Report

Search the DGRC for BO18888

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:88
Vector:pDNR-Dual
Associated Gene/TranscriptMat1-RA
Protein status:BO18888.pep: Imported from assembly
Sequenced Size:994

Clone Sequence Records

BO18888.complete Sequence

994 bp assembled on 2009-05-13

GenBank Submission: KX799303

> BO18888.complete
GAAGTTATCAGTCGACATGGACGACCAGGCGTGCCCGCGGTGCAAGACCA
CCAAATACCGGAATCCATCGCTCAAGCTGATGGTCAACGTTTGCGGACAC
ACATTATGCGAATCTTGCGTGGACTTGCTGTTCCTCAAAGGATCCGGCGC
CTGTCCAGAGTGCATGGTCCCATTGCGGCGCAACAACTTCCGCGTGCAGC
TTTTTGAGGACCCAATGGTGGAGAAGGAGGTGGATATTCGTAGGCGAATT
CTGCGCGACTACAATAAACGTGAGGAGGACTTTGCCTCCCTGGCGGAGTA
CAATGACTATCTGGAGGAGATCGAGGACATTGTGTACAATCTGTGCAACA
ACATCGACATCATCGAGACAAACAAGCGTATTGAGGCCTACAAGCGTGAT
AACCGTGAGGTCATTCAGCGGAATAAAACCCGCGTGGGACGCGATGAGTA
CGCGTTGGAGGAGATGCTGGAGCTGGAGAAAGTTCAGGAGGAGGCGCGTA
GGAAGGAGCTGGAGGAACTGGAGAACGAGCACAAGAAGAAGAAGGCCCGC
GACAAGCAGGCGCTGATCGAGGAGCTGATGTACAGCGGCAAGGATGCCGC
CCAAATTGTCACCGAGTTCGCCGAAAAAGCGGAAAAGCAGCGCGAGGAGG
AGAAACAGCTTCCACCGCCGAAGCCCGCCAACGAGTTCTCTACGGGCATA
AAGTTCGGACAGACAGCTGATCCCAGTCTGCTGCCCGTTCCCAAATCGGA
GGAGGGTCCACTTTTCGTATACGAGCCACTTGTTCCTTTCAGTGAGGGAC
CTGCCATGCCGCCCACAAATGAGATCGTGTCCAGGGGCTATATTGCCCAC
ATACGAGCTGAAACACCGCAGGAGAACGCCGGCGGATTCACATCCGCTCT
GGCTTGTGAACGGGCGCTTCAGGAGGCGCTGCAGGGACTCTACTATACGG
CTACAACGGGTGTGGTATCTGGCACCGCAAGCTTTCTAGACCAT

BO18888.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Mat1-RA 963 CG7614-PA 1..960 17..976 4800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
Mat1-RA 1213 CG7614-RA 110..1069 17..976 4800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10738761..10739720 976..17 4800 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:30:11 has no hits.

BO18888.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:36 Download gff for BO18888.complete
Subject Subject Range Query Range Percent Splice Strand
Mat1-RA 115..1074 17..978 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:16:40 Download gff for BO18888.complete
Subject Subject Range Query Range Percent Splice Strand
Mat1-RA 110..1069 17..978 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:00 Download gff for BO18888.complete
Subject Subject Range Query Range Percent Splice Strand
Mat1-RA 110..1069 17..978 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:12:00 Download gff for BO18888.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10738757..10739720 17..978 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:16:40 Download gff for BO18888.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6626262..6627225 17..978 99   Minus

BO18888.pep Sequence

Translation from 16 to 994

> BO18888.pep
MDDQACPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFLKGSGACPECM
VPLRRNNFRVQLFEDPMVEKEVDIRRRILRDYNKREEDFASLAEYNDYLE
EIEDIVYNLCNNIDIIETNKRIEAYKRDNREVIQRNKTRVGRDEYALEEM
LELEKVQEEARRKELEELENEHKKKKARDKQALIEELMYSGKDAAQIVTE
FAEKAEKQREEEKQLPPPKPANEFSTGIKFGQTADPSLLPVPKSEEGPLF
VYEPLVPFSEGPAMPPTNEIVSRGYIAHIRAETPQENAGGFTSALACERA
LQEALQGLYYTATTGVVSGTASFLDH

BO18888.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Mat1-PA 320 CG7614-PA 1..320 1..320 1666 100 Plus