BO18895.complete Sequence
685 bp assembled on 2009-05-13
GenBank Submission: KX794025
> BO18895.complete
GAAGTTATCAGTCGACATGGCTTTCAAGCTCGTTGCTCTGGTTTCCTGCT
GCCTGGCAGCCGTGTCCGCTGGACTTATCCCTGTGGAGCAGCACGACCAG
CATCCCCAGCTGTACCAGGCCCACCAGCCCCAGCATGTGATCTACCAAAA
GCAGCACGAGATCCATCCTCACGGCCATGAGGTCTATCCCGATGACCCAC
ATCCCAAGTACAACTTCGCCTACGATGTGCAGGATGCGCTCTCCGGAGAC
TCGAAGAGCCAGGTGGAGTCTAGGGATGGGGATGTGGTGCAGGGAGAGTA
CTCTCTGGATGATGCTGATGGCTTCCGTCGTACTGTAAAATACACCGCCG
ATTCCGTCAATGGATTTAATGCCGTTGTGCACCGCGAGCCCCTGGCCCAT
GTGCACCACAAGGTGGTGGCTGCAGCTCCTGTTCAGTACCACCACGCTCC
TGCCGCCGCCGCTGCCGTCATCAAGAGCTACGCCTCCCCTTCCCAGGCTT
ATGTCGCTCCCACCTACGCAGCCCCTGCCTACACCGCCCCCGCCTACGCC
ACCCACCAGGCTGAGCAGCCGCAGGAGCGGGAGCACCAGCAGCACCACTA
TGCCAGCTACGAGTCCCCTGCCCACGCCCAGGCCGCCCACGAAGGACATG
AGTACTACCACCACCAGGCAAGCTTTCTAGACCAT
BO18895.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Ac-RA | 654 | CG1327-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
| Ccp84Ad-RA | 600 | CG2341-PA | 175..370 | 200..395 | 350 | 78.6 | Plus |
| Cpr5C-RA | 438 | CG4052-PA | 181..376 | 200..395 | 320 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:56:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Ac-RA | 1060 | CG1327-RA | 90..740 | 17..667 | 3255 | 100 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 241..436 | 200..395 | 350 | 78.6 | Plus |
| Cpr5C-RA | 605 | CG4052-RA | 235..430 | 200..395 | 320 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6695468..6696112 | 667..23 | 3210 | 99.8 | Minus |
| 3R | 32079331 | 3R | 6693033..6693228 | 200..395 | 350 | 78.6 | Plus |
| X | 23542271 | X | 5804974..5805169 | 200..395 | 320 | 77.6 | Plus |
| 3R | 32079331 | 3R | 6687103..6687298 | 200..395 | 290 | 76.5 | Plus |
| 3R | 32079331 | 3R | 6689759..6689954 | 395..200 | 275 | 76 | Minus |
| 3L | 28110227 | 3L | 4215958..4216132 | 207..381 | 245 | 76 | Plus |
| 3R | 32079331 | 3R | 6702374..6702494 | 395..275 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:56:27 has no hits.
BO18895.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:37 Download gff for
BO18895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 90..740 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:41:31 Download gff for
BO18895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 90..740 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:46:25 Download gff for
BO18895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccp84Ac-RA | 90..740 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:46:25 Download gff for
BO18895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6695466..6696116 | 17..669 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:41:31 Download gff for
BO18895.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2521188..2521838 | 17..669 | 98 | | Minus |
BO18895.pep Sequence
Translation from 16 to 685
> BO18895.pep
MAFKLVALVSCCLAAVSAGLIPVEQHDQHPQLYQAHQPQHVIYQKQHEIH
PHGHEVYPDDPHPKYNFAYDVQDALSGDSKSQVESRDGDVVQGEYSLDDA
DGFRRTVKYTADSVNGFNAVVHREPLAHVHHKVVAAAPVQYHHAPAAAAA
VIKSYASPSQAYVAPTYAAPAYTAPAYATHQAEQPQEREHQQHHYASYES
PAHAQAAHEGHEYYHHQASFLDH
BO18895.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccp84Ac-PA | 217 | CG1327-PA | 1..217 | 1..217 | 1177 | 100 | Plus |
| Ccp84Ad-PA | 199 | CG2341-PA | 1..198 | 1..180 | 391 | 49.5 | Plus |
| Cpr5C-PA | 145 | CG4052-PA | 1..145 | 1..143 | 365 | 56.8 | Plus |
| Ccp84Ab-PA | 221 | CG1252-PA | 1..221 | 1..216 | 351 | 43.6 | Plus |
| Ccp84Af-PA | 151 | CG1331-PA | 1..146 | 1..149 | 341 | 51 | Plus |
