Clone BO18896 Report

Search the DGRC for BO18896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:188
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG10340-RA
Protein status:BO18896.pep: Imported from assembly
Sequenced Size:868

Clone Sequence Records

BO18896.complete Sequence

868 bp assembled on 2009-05-13

GenBank Submission: KX796208

> BO18896.complete
GAAGTTATCAGTCGACATGGCATGCGCCAAGAAATTGCTTTTTCGCGTTT
TCCTGAATAACTCTTTGACGGCGAACCGCACAATCACCATGTCCGCCGCG
CGACGTGCCGAGGAGGCCATTGAGAAGCTGAAGGAGGACAATCCCTACTA
CTCCAAGTACGCGAGCAAGATTGCCAAGTTGCAGCAGACGTCGGCTGAGG
AGTTCCTGGATCGCGTGGAGCGTGTGGTGAATCCCATCAAAGATGGGCAG
AGCCAGGCCAGGTCCTACTCCGAGCTTCTGAATCCCAAGCAAAAACTGCA
GGCTGAGCAGGCAGCTGAACTGCCCCACAAGAAGCTCACTGATATCATGA
AACTGGAACTGATTGAGGACAAGACCGCCGAAGAGGTCTCCCAGATTTGG
CTGGAGTACCATAAGACCAAGGAGGTCCTGGCCGCCACTCTAAGCACATC
TCAGTACGAGAACCTCATGGCGCGCGCCAAGGAGCACCCCGTCTTTCTGC
TGCCACTGCCCCGCAGTGAGGGATTCGAGTTTGTCATGCTCCAGTTCGCA
GCCAACACCGTGCACTTCACTCCGCTTTTGGCGTACCAGGTGCACCATGA
GAACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACA
AGGGTGTAGTTCTCATGCGCGGTGAATACGACACTAAGGTACTCACAGCC
CAGGAGGCTCAGTGTCTGGCCAATGAGTTGCAGATGTTCTACCTGAAGCC
CGACGAGGGCAAGCTGCGCTTGCTGAACACTTTTACCCGTAAGCCGGACG
AGTTCAAGCACATGGATCTAATTAAGGAAGTTGAGAACATACAGCTGGTC
GCAAGCTTTCTAGACCAT

BO18896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-RA 837 CG10340-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-RA 938 CG10340-RA 44..877 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16613459..16614051 850..258 2965 100 Minus
3R 32079331 3R 16614102..16614348 263..17 1235 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:48:31 has no hits.

BO18896.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:37 Download gff for BO18896.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 40..873 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:32 Download gff for BO18896.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 44..877 17..852 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:42 Download gff for BO18896.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 44..877 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:42 Download gff for BO18896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16613457..16614047 262..852 99 <- Minus
3R 16614104..16614348 17..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:32 Download gff for BO18896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12439179..12439769 262..852 99 <- Minus
arm_3R 12439826..12440070 17..261 100   Minus

BO18896.pep Sequence

Translation from 16 to 868

> BO18896.pep
MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS
KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA
ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL
MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC
LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL
RLLNTFTRKPDEFKHMDLIKEVENIQLVASFLDH

BO18896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-PA 278 CG10340-PA 1..278 1..278 1412 100 Plus