BO18896.complete Sequence
868 bp assembled on 2009-05-13
GenBank Submission: KX796208
> BO18896.complete
GAAGTTATCAGTCGACATGGCATGCGCCAAGAAATTGCTTTTTCGCGTTT
TCCTGAATAACTCTTTGACGGCGAACCGCACAATCACCATGTCCGCCGCG
CGACGTGCCGAGGAGGCCATTGAGAAGCTGAAGGAGGACAATCCCTACTA
CTCCAAGTACGCGAGCAAGATTGCCAAGTTGCAGCAGACGTCGGCTGAGG
AGTTCCTGGATCGCGTGGAGCGTGTGGTGAATCCCATCAAAGATGGGCAG
AGCCAGGCCAGGTCCTACTCCGAGCTTCTGAATCCCAAGCAAAAACTGCA
GGCTGAGCAGGCAGCTGAACTGCCCCACAAGAAGCTCACTGATATCATGA
AACTGGAACTGATTGAGGACAAGACCGCCGAAGAGGTCTCCCAGATTTGG
CTGGAGTACCATAAGACCAAGGAGGTCCTGGCCGCCACTCTAAGCACATC
TCAGTACGAGAACCTCATGGCGCGCGCCAAGGAGCACCCCGTCTTTCTGC
TGCCACTGCCCCGCAGTGAGGGATTCGAGTTTGTCATGCTCCAGTTCGCA
GCCAACACCGTGCACTTCACTCCGCTTTTGGCGTACCAGGTGCACCATGA
GAACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACA
AGGGTGTAGTTCTCATGCGCGGTGAATACGACACTAAGGTACTCACAGCC
CAGGAGGCTCAGTGTCTGGCCAATGAGTTGCAGATGTTCTACCTGAAGCC
CGACGAGGGCAAGCTGCGCTTGCTGAACACTTTTACCCGTAAGCCGGACG
AGTTCAAGCACATGGATCTAATTAAGGAAGTTGAGAACATACAGCTGGTC
GCAAGCTTTCTAGACCAT
BO18896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-RA | 837 | CG10340-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-RA | 938 | CG10340-RA | 44..877 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16613459..16614051 | 850..258 | 2965 | 100 | Minus |
3R | 32079331 | 3R | 16614102..16614348 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:48:31 has no hits.
BO18896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:37 Download gff for
BO18896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 40..873 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:32 Download gff for
BO18896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 44..877 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:42 Download gff for
BO18896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 44..877 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:42 Download gff for
BO18896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16613457..16614047 | 262..852 | 99 | <- | Minus |
3R | 16614104..16614348 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:32 Download gff for
BO18896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12439179..12439769 | 262..852 | 99 | <- | Minus |
arm_3R | 12439826..12440070 | 17..261 | 100 | | Minus |
BO18896.pep Sequence
Translation from 16 to 868
> BO18896.pep
MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS
KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA
ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL
MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC
LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL
RLLNTFTRKPDEFKHMDLIKEVENIQLVASFLDH
BO18896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-PA | 278 | CG10340-PA | 1..278 | 1..278 | 1412 | 100 | Plus |