Clone BO18953 Report

Search the DGRC for BO18953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:189
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptNHP2-RA
Protein status:BO18953.pep: Imported from assembly
Sequenced Size:514

Clone Sequence Records

BO18953.complete Sequence

514 bp assembled on 2009-05-13

GenBank Submission: KX796881

> BO18953.complete
GAAGTTATCAGTCGACATGGGCAAAGTGAAAGTAGAGCGCTCCGAGGATG
CCGATGAGTCCGTTGTGGCCAGCGGCGATGTTACCATCAAGGAGGAGGAG
TCCTACGACGACAAGCTGATCTTTGTGAACGCCATCGCGAAACCGATGGC
AGGTAAAAAACTGGCCAAAAAGTGCTACAAACTGGTGAAGAAGGCCATGA
AGCACAAGACTTTCCTGCGAAATGGACTTAAGGATGTACAGACTCGCCTG
CGCAAGGGCGAAACTGGCATTTGCATCTTTGCTGGCGACGTTACACCTGT
GGACATCATGTGCCACTTACCAGCCGTCTGCGAGGAGAAGGGCATCCCCT
ATACCTACACCCCCAGTCGAGCGGATCTTGGAGCTGCCATGGGCGTGAAG
CGCGGTACAGTCGCCCTGCTGGTCCGCCAGAACGAGGAGTACAAGGATCT
GTACGACGAGGTCAAGGAGGAGCTGTCTGCACTAAACATACCCGTCGCAA
GCTTTCTAGACCAT

BO18953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
NHP2-RB 483 CG5258-PB 1..480 17..496 2400 100 Plus
NHP2-RA 483 CG5258-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
NHP2-RB 781 CG5258-RB 79..558 17..496 2400 100 Plus
NHP2-RA 667 CG5258-RA 79..558 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14801840..14802090 267..17 1255 100 Minus
3L 28110227 3L 14801551..14801780 496..267 1150 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:22 has no hits.

BO18953.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:36:36 Download gff for BO18953.complete
Subject Subject Range Query Range Percent Splice Strand
NHP2-RA 100..579 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:52 Download gff for BO18953.complete
Subject Subject Range Query Range Percent Splice Strand
NHP2-RA 79..558 17..498 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:04 Download gff for BO18953.complete
Subject Subject Range Query Range Percent Splice Strand
NHP2-RA 79..558 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:04 Download gff for BO18953.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14801549..14801779 268..498 99 <- Minus
3L 14801840..14802090 17..267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:52 Download gff for BO18953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14794649..14794879 268..498 99 <- Minus
arm_3L 14794940..14795190 17..267 100   Minus

BO18953.pep Sequence

Translation from 16 to 514

> BO18953.pep
MGKVKVERSEDADESVVASGDVTIKEEESYDDKLIFVNAIAKPMAGKKLA
KKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCH
LPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVK
EELSALNIPVASFLDH

BO18953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
NHP2-PB 160 CG5258-PB 1..160 1..160 818 100 Plus
NHP2-PA 160 CG5258-PA 1..160 1..160 818 100 Plus
hoip-PB 127 CG3949-PB 5..125 37..156 194 35.2 Plus
hoip-PA 127 CG3949-PA 5..125 37..156 194 35.2 Plus