Clone BO19604 Report

Search the DGRC for BO19604

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG15472-RA
Protein status:BO19604.pep: Imported from assembly
Sequenced Size:937

Clone Sequence Records

BO19604.complete Sequence

937 bp assembled on 2009-05-13

GenBank Submission: KX794511

> BO19604.complete
GAAGTTATCAGTCGACATGGACCGAAATAAGCCACTCAGACTAATTGGCC
TCTCCAGTACCGAGCCCGAAAAACAAACGAAACTTACACTGAACCATCTA
TGTCAGCTGCCAGCACAATGTCCCATAGAAAAATGCATTTCCACCGTTTT
CAAGGATGATATGCTCCAACATTTGGCCCAACGCCATTTCCGATCAAATG
TGAAAAAGCATTTGCAAGTGGCCTTCAACGGAGAACGCTGTACCCTGGTC
TTTGATGTTTCTCAGCTGATTGGAACGCAGACCATATGTCTGGGAGTTCT
TCTTTACGGCGGCGTGCGTGGTAAGCATAGCCAATTACCCGGAGAACGAG
AATTCTGTTATCACAATCGATTGAAAGAGGATTCGGGGCTGGAATCGCTG
AAGGACTATCTGCCCATTATGGTGCTGGTGAAGAGGACAACATTCCTCTG
CTGGGCACTTGTGGACAGAAAAATGGAATCGCAAGAAGATCTTAATGGTA
AACAGTCAAAAGATCTTAAGCAGGTAAAACATCTAGATTTCTCAAATGAT
ACGCATCCCAAATGCAGTGAAGAATCGATCAAAAGGTGCGATAGTGGCCA
AAAGAATAACGATCTAAAGACGACCACTGAAGCCGAGCAGGAAGAGATTA
TGGACTCCGATATCTTGATAATTTGGACCCAAAGTGCACCCTGCATCCGA
CCACTCCACGTTGCCATGACCGTATTCAACAGCACCTTGTCGGTTGGCCG
GAGCGCCATGCGTTGTGTGGCAAATTCGGGCCAAATGTATACCGAAATCG
GTGGCAAGGATCTGCCCAAGGACCGGCATTCCCTTTTGATAACGCAGCAA
GAATTGAAGGAGATATGTGGCGCAGAACATCATCTCCATCTCGAACTGAT
CCTGCATGAGCCGTTGGAAGCAAGCTTTCTAGACCAT

BO19604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15472-RA 906 CG15472-PA 1..903 17..919 4500 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15472-RA 1411 CG15472-RA 64..966 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4769172..4770074 919..17 4500 99.9 Minus
Blast to na_te.dros performed on 2014-11-27 20:46:58 has no hits.

BO19604.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:04 Download gff for BO19604.complete
Subject Subject Range Query Range Percent Splice Strand
CG15472-RA 1..903 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:59 Download gff for BO19604.complete
Subject Subject Range Query Range Percent Splice Strand
CG15472-RA 64..966 17..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:08 Download gff for BO19604.complete
Subject Subject Range Query Range Percent Splice Strand
CG15472-RA 64..966 17..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:08 Download gff for BO19604.complete
Subject Subject Range Query Range Percent Splice Strand
X 4769170..4770074 17..921 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:59 Download gff for BO19604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 4663203..4664107 17..921 99   Minus

BO19604.pep Sequence

Translation from 16 to 937

> BO19604.pep
MDRNKPLRLIGLSSTEPEKQTKLTLNHLCQLPAQCPIEKCISTVFKDDML
QHLAQRHFRSNVKKHLQVAFNGERCTLVFDVSQLIGTQTICLGVLLYGGV
RGKHSQLPGEREFCYHNRLKEDSGLESLKDYLPIMVLVKRTTFLCWALVD
RKMESQEDLNGKQSKDLKQVKHLDFSNDTHPKCSEESIKRCDSGQKNNDL
KTTTEAEQEEIMDSDILIIWTQSAPCIRPLHVAMTVFNSTLSVGRSAMRC
VANSGQMYTEIGGKDLPKDRHSLLITQQELKEICGAEHHLHLELILHEPL
EASFLDH

BO19604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15472-PA 301 CG15472-PA 1..301 1..301 1588 100 Plus