Clone BO19605 Report

Search the DGRC for BO19605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptnimB5-RA
Protein status:BO19605.pep: Imported from assembly
Sequenced Size:979

Clone Sequence Records

BO19605.complete Sequence

979 bp assembled on 2009-05-13

GenBank Submission: KX794778

> BO19605.complete
GAAGTTATCAGTCGACATGTGGTTGCGAGACTTGCGCATTCGTCTAAGTT
TTTTCCACCTGATGGTGTGTCTGCCCAGTATTTACACAAATGTGCCAAGC
TATTCGGATCGGTACAACAGAAGGCCTGTGTCCCAGGATCCAGGAATGGG
AACCTATGGCCGCGGGTACATGGAAAACCGGCAGTTGTCCTATAATCGAC
CTGGACCAGCCAACTTCCAAGATCCCAGAAATGTGGAGTTGCAGCCGAAA
CGACGAGAGTATCTCATTCGATCACATGAAACGCAATCCGATAGGGGGCA
ACACAAATGCCGCATTTGGGTGCCCCCCGATACGGTGGAAAAGTACTCGT
ACCCCAGTGTCATCCAGACGGACCAGGCCAACCGGCTGTCCCTGATCGAG
GTCTGCTGCACCGGATACTCGGCCAGTCGTCTGATGGGCGTAACCGTGTG
CCGGGCGCAATGTGGCTGCCAGAACGGAAGCTGTAAGATTCCTGGTGAGT
GCGAGTGCTATGATGGCTTTGTGCGTAACGACAACGGTGACTGTGTGTTT
GCCTGCCCGCTGGGCTGCCAAAATGGTCAGTGCTATCTGGACGGCAGCTG
TCAGTGTGATCCGGGCTACAAGCTGGACGAGACGCGACGCTTCTGCCGCC
CGATCTGCAGCAGTGGCTGTGGCAGCAGTCCGCGGCACAACTGCACCGAA
CCGGAGATCTGTGGCTGCTCCAAGGGCTATCAGCTGACCGACGACGGATG
CCAGCCCGTCTGCGAACCGGACTGTGGAATCGGCGGACTCTGCAAGGACA
ACAACCAGTGCGACTGCGCTCCTGGTTACAATCTGAGGGATGGTGTCTGC
CAGGCCGATTGCTATCAGAAGTGCAACAATGGCGTGTGTGTCAGCCGAAA
CCGATGTCTATGCGATCCGGGATATACCTACCATGAGCAATCAACCATGT
GCGTTCCAGTAGCAAGCTTTCTAGACCAT

BO19605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
NimB5-RC 948 CG16873-PC 1..945 17..961 4725 100 Plus
NimB5-RB 948 CG16873-PB 1..945 17..961 4725 100 Plus
NimB5-RA 948 CG16873-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
NimB5-RC 1395 CG16873-RC 112..1056 17..961 4725 100 Plus
NimB5-RB 1335 CG16873-RB 52..996 17..961 4725 100 Plus
NimB5-RA 1141 CG16873-RA 52..996 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13971139..13971682 325..868 2720 100 Plus
2L 23513712 2L 13970559..13970866 17..324 1540 100 Plus
2L 23513712 2L 13971741..13971834 868..961 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:23:06 has no hits.

BO19605.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:04 Download gff for BO19605.complete
Subject Subject Range Query Range Percent Splice Strand
nimB5-RA 31..975 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:34 Download gff for BO19605.complete
Subject Subject Range Query Range Percent Splice Strand
NimB5-RA 52..996 17..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:13 Download gff for BO19605.complete
Subject Subject Range Query Range Percent Splice Strand
NimB5-RA 52..996 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:13 Download gff for BO19605.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13970559..13970866 17..324 100 -> Plus
2L 13971139..13971681 325..867 100 -> Plus
2L 13971741..13971834 868..963 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:34 Download gff for BO19605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13970559..13970866 17..324 100 -> Plus
arm_2L 13971139..13971681 325..867 100 -> Plus
arm_2L 13971741..13971834 868..963 97   Plus

BO19605.pep Sequence

Translation from 16 to 979

> BO19605.pep
MWLRDLRIRLSFFHLMVCLPSIYTNVPSYSDRYNRRPVSQDPGMGTYGRG
YMENRQLSYNRPGPANFQDPRNVELQPKRREYLIRSHETQSDRGQHKCRI
WVPPDTVEKYSYPSVIQTDQANRLSLIEVCCTGYSASRLMGVTVCRAQCG
CQNGSCKIPGECECYDGFVRNDNGDCVFACPLGCQNGQCYLDGSCQCDPG
YKLDETRRFCRPICSSGCGSSPRHNCTEPEICGCSKGYQLTDDGCQPVCE
PDCGIGGLCKDNNQCDCAPGYNLRDGVCQADCYQKCNNGVCVSRNRCLCD
PGYTYHEQSTMCVPVASFLDH

BO19605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
NimB5-PC 315 CG16873-PC 1..315 1..315 1821 100 Plus
NimB5-PB 315 CG16873-PB 1..315 1..315 1821 100 Plus
NimB5-PA 315 CG16873-PA 1..315 1..315 1821 100 Plus
NimB1-PA 402 CG33119-PA 53..283 92..317 518 44 Plus
NimB1-PB 403 CG33119-PB 53..283 92..317 518 44 Plus
NimB1-PA 402 CG33119-PA 198..360 130..305 284 34.3 Plus