Clone BO19607 Report

Search the DGRC for BO19607

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG15874-RA
Protein status:BO19607.pep: Imported from assembly
Sequenced Size:874

Clone Sequence Records

BO19607.complete Sequence

874 bp assembled on 2009-05-13

GenBank Submission: KX797739

> BO19607.complete
GAAGTTATCAGTCGACATGAAATACACCGCCCTTTGGCGCTCGGTGGGCG
CCATGAGCTGCGGATCCCTGGTCACCTACTTTGCCATCCGGCTGTTCGAT
GGCCTGGAACCCTCCATGTTATCAGGTGGAGCACAAGGGGGTAAGGGGCG
GGCGATTGAACCTTTGGCCAGTGGCGCCTGGCGGCACCATTGGGACTTGG
ACAAGCCGCAGCTGCAAAAGGTGGCAAATGGCGAGGAGTCCTCCGCCCTG
CGACACATTATCCTGGTGAGACATGGCGAGTACACGAGGACCCCGAATGG
AAGCCACCTCACGGAACTGGGCCGTCGGCAGGCGGAACGGACGGGGCAAA
GGTTGCGGGAAATGGGCTTGTCCTGGGACCACGTGGTGGCCTCTACAATG
CCGCGTGCCGAGGAGACGGCCATGATCATCCTGAAGCAGCTGAACCTCGA
TCCCCTGAAGATGAAGCGCTGCACTTTGCTGCCGGAGGGCACTCCGTACC
CAGGAGATCCCCCCTCCAAGAGGAGTGCCCGCAGCCTGGACCTGGCCTAT
CAGAGGGATGGTCCGCGGATCGAGGCCGCCTTTAGGCGCTACTTCTTCAG
GGCCAGTCCGGAGCAGGAGCACGACTCGTACCTGCTCATCGTGGGCCACT
CGAATGTGATCCGTTACCTGATTCTGCGGGCCCTGCAGCTTCCTCCGGCC
GCCTGGACGCGCCTCAACCTGAACCACGGCTCCATCACCTGGCTGACTGT
GTGGCCGTCTGGCTACGTTACCTTGCGCTGCTTGGGGGACTCCGGCTTCA
TGCCGGTGACCGAGATCACCCATCGAAGGCCGTCACCGGCGAAATCCGGC
AGTAACGCAAGCTTTCTAGACCAT

BO19607.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-2-RA 843 CG15874-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-2-RA 1390 CG15874-RA 37..877 16..856 4205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24431857..24432697 856..16 4205 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:21:18 has no hits.

BO19607.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:02 Download gff for BO19607.complete
Subject Subject Range Query Range Percent Splice Strand
CG15874-RA 1..840 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:41 Download gff for BO19607.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 38..877 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:39 Download gff for BO19607.complete
Subject Subject Range Query Range Percent Splice Strand
Pgam5-2-RA 38..877 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:39 Download gff for BO19607.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24431853..24432696 17..858 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:41 Download gff for BO19607.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20319376..20320219 17..858 99   Minus

BO19607.pep Sequence

Translation from 16 to 874

> BO19607.pep
MKYTALWRSVGAMSCGSLVTYFAIRLFDGLEPSMLSGGAQGGKGRAIEPL
ASGAWRHHWDLDKPQLQKVANGEESSALRHIILVRHGEYTRTPNGSHLTE
LGRRQAERTGQRLREMGLSWDHVVASTMPRAEETAMIILKQLNLDPLKMK
RCTLLPEGTPYPGDPPSKRSARSLDLAYQRDGPRIEAAFRRYFFRASPEQ
EHDSYLLIVGHSNVIRYLILRALQLPPAAWTRLNLNHGSITWLTVWPSGY
VTLRCLGDSGFMPVTEITHRRPSPAKSGSNASFLDH

BO19607.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
Pgam5-2-PA 280 CG15874-PA 1..280 1..280 1486 100 Plus
Pgam5-PB 288 CG14816-PB 2..286 8..277 576 44.2 Plus
Pgam5-PA 289 CG14816-PA 2..287 8..277 573 44.2 Plus