BO19612.complete Sequence
853 bp assembled on 2009-05-13
GenBank Submission: KX799348
> BO19612.complete
GAAGTTATCAGTCGACATGTTGCTCATTTTGTTACCACTTGTTCTGTTCA
CTTCGAGTGCCGCAAGTCAGATCCTATATCCGCCGCAGTATACCAAGAAT
CGCATTGTGGGCGGGGAGGAGGCTGCCGCAGGTCTGGCACCTTATCAGAT
ATCCCTTCAAGGAATCGGCAGTGGAGCTCATTCCTGTGGCGGTGCTATCA
TCGATGAACGGTGGATTATAACGGCGGCTCACTGTACAAGAGGCAGACAG
GCGACGGCATTTCGGGTCCTAACAGGCACACAGGATCTGCATCAAAATGG
ATCCAAGTATTACTATCCCGACAGGATTGTGGAGCATAGTAACTATGCAC
CACGCAAGTATCGCAACGATATAGCTTTACTGCATCTGAATGAATCGATT
GTGTTTGATAATGCCACTCAACCGGTGGAACTGGATCACGAGGCCTTGGT
TCCAGGATCCCGACTCCTTTTAACCGGTTGGGGAACCCTCTCCTTGGGCG
GAGATGTTCCCGCCCGTCTGCAGAGTCTGGAGGTCAACTATGTGCCCTTC
GAGCAGTGTCGAGCTGCCCACGACAATAGCACTCGGGTGGACATTGGCCA
CGTTTGCACCTTCAATGACAAGGGACGCGGAGCGTGTCATGGAGATTCCG
GTGGTCCTCTGGTGCACAATGGCAAGCTGGTGGCTCTGGTCAACTGGGGA
CTGCCATGTGCTAAAGGATATCCAGATGCTCACGCTTCAATTTCATATTA
TCACGACTTTATACGCACTCACCTAAGTCTATCCAAAACGGACAGCTCTG
AGGATATCGAGGAGGAAATGATTGCTCTCCAGGATGCAAGCTTTCTAGAC
CAT
BO19612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-RA | 822 | CG5255-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG31269-RB | 822 | CG31269-PB | 640..702 | 638..700 | 180 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-RA | 914 | CG5255-RA | 12..837 | 10..835 | 4100 | 99.8 | Plus |
| CG31269-RB | 937 | CG31269-RB | 645..707 | 638..700 | 180 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17137904..17138619 | 10..725 | 3550 | 99.7 | Plus |
| 3R | 32079331 | 3R | 17138676..17138788 | 723..835 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:07:29 has no hits.
BO19612.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:01 Download gff for
BO19612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 8..821 | 22..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:58 Download gff for
BO19612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 24..837 | 22..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:39 Download gff for
BO19612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5255-RA | 24..837 | 22..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:39 Download gff for
BO19612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17137916..17138619 | 22..725 | 100 | -> | Plus |
| 3R | 17138679..17138788 | 726..837 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:58 Download gff for
BO19612.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12963638..12964341 | 22..725 | 100 | -> | Plus |
| arm_3R | 12964401..12964510 | 726..837 | 98 | | Plus |
BO19612.pep Sequence
Translation from 16 to 853
> BO19612.pep
MLLILLPLVLFTSSAASQILYPPQYTKNRIVGGEEAAAGLAPYQISLQGI
GSGAHSCGGAIIDERWIITAAHCTRGRQATAFRVLTGTQDLHQNGSKYYY
PDRIVEHSNYAPRKYRNDIALLHLNESIVFDNATQPVELDHEALVPGSRL
LLTGWGTLSLGGDVPARLQSLEVNYVPFEQCRAAHDNSTRVDIGHVCTFN
DKGRGACHGDSGGPLVHNGKLVALVNWGLPCAKGYPDAHASISYYHDFIR
THLSLSKTDSSEDIEEEMIALQDASFLDH
BO19612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5255-PA | 273 | CG5255-PA | 1..273 | 1..273 | 1447 | 100 | Plus |
| CG31269-PB | 273 | CG31269-PB | 5..260 | 1..254 | 607 | 50 | Plus |
| CG17475-PB | 288 | CG17475-PB | 47..272 | 27..254 | 562 | 47.4 | Plus |
| CG17475-PA | 288 | CG17475-PA | 47..272 | 27..254 | 562 | 47.4 | Plus |
| CG31265-PA | 266 | CG31265-PA | 8..259 | 2..254 | 547 | 44.9 | Plus |
