Clone BO19613 Report

Search the DGRC for BO19613

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG5285-RA
Protein status:BO19613.pep: Imported from assembly
Sequenced Size:874

Clone Sequence Records

BO19613.complete Sequence

874 bp assembled on 2009-05-13

GenBank Submission: KX799481

> BO19613.complete
GAAGTTATCAGTCGACATGCTGAAGCGCAAACTGAACCAGCAAAAATGCA
ATCTGGAGATTGGGGAGCCCACTAAGACATCCGCAAGGCAGGGCAGTACA
TCGGAATTCTTTGATAAGCCGCTGTGGCTTAAATTCTACGAAACCGAAGT
CAAGTTAAATGAGGCGCTGGAAAAACTGAATCCTCCTGAGAGCACACCGT
TCATCTACAACCCGATAGTATATGCATCCCAGCTGCACTGCGACTATTTA
CGTCGCTATATGGACGGTCCCAAGAAGCTGGTATTTGTTGGCATGAATCC
AGGGCCCAATGGAATGGCCCAAACCGGAATTCCCTTTGGCAATGTGCGCA
CAGTAAAGTTGTTAATGCAGCTGGCTGGTTCGGTGGACCAACCTCCAGTC
GTGCATCCCAAACGTCCAGTCGCTGGCTTGGATTGTCGGATTGAGGAGCC
CAGTGGTGTGCGTTTGTGGGAGCTGTTCCTCCGACTGGCTGGCAGCATGC
AGACCTTCTCCCAGCAGTGTTTCGTCCACAATTTCTGTCCGCTAGCTTTC
TTTGGCGCAGATGGCAGGAACATAACGCCCAGTGAAATCAGAGGAGCTTA
CAAAAATCAGCTAGGAGACCTGTGCCTGCACACCCTGGAGGAACAACTGA
AGCTCCTCCAACCCGACGTGATTGTGGCCGTTGGGGAGTATGTTCACAGC
GCACTGAAGCGTTCAGGATATGCCAAATCCAATTGCGTTTCGGTGCTCCG
ACTGCCGCATCCTAGTCCGCGTTCTACTAATAATACCAATTGGCCCGAGA
AGGCTCAAGCATTTTTGGAGGAGCACAACCTAATCCGATTCATGCGGAAT
GAGGCTGCAAGCTTTCTAGACCAT

BO19613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5285-RA 843 CG5285-PA 1..840 17..856 4200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5285-RA 983 CG5285-RA 70..909 17..856 4200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17151029..17151556 329..856 2640 100 Plus
3R 32079331 3R 17150656..17150967 17..328 1560 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:52:36 has no hits.

BO19613.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:58 Download gff for BO19613.complete
Subject Subject Range Query Range Percent Splice Strand
CG5285-RA 1..840 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:42:33 Download gff for BO19613.complete
Subject Subject Range Query Range Percent Splice Strand
CG5285-RA 70..909 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:04 Download gff for BO19613.complete
Subject Subject Range Query Range Percent Splice Strand
CG5285-RA 70..909 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:04 Download gff for BO19613.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17150656..17150967 17..328 100 -> Plus
3R 17151029..17151556 329..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:42:33 Download gff for BO19613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12976378..12976689 17..328 100 -> Plus
arm_3R 12976751..12977278 329..858 99   Plus

BO19613.pep Sequence

Translation from 16 to 874

> BO19613.pep
MLKRKLNQQKCNLEIGEPTKTSARQGSTSEFFDKPLWLKFYETEVKLNEA
LEKLNPPESTPFIYNPIVYASQLHCDYLRRYMDGPKKLVFVGMNPGPNGM
AQTGIPFGNVRTVKLLMQLAGSVDQPPVVHPKRPVAGLDCRIEEPSGVRL
WELFLRLAGSMQTFSQQCFVHNFCPLAFFGADGRNITPSEIRGAYKNQLG
DLCLHTLEEQLKLLQPDVIVAVGEYVHSALKRSGYAKSNCVSVLRLPHPS
PRSTNNTNWPEKAQAFLEEHNLIRFMRNEAASFLDH

BO19613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5285-PA 280 CG5285-PA 1..280 1..280 1493 100 Plus