BO19617.complete Sequence
994 bp assembled on 2009-05-13
GenBank Submission: KX794611
> BO19617.complete
GAAGTTATCAGTCGACATGAGTTCTTTGACTCATTCGATTTGGTTTTCTG
CGATTGCGATGGCAAGTTTGTTTCATTTGTACCTACACTATATATGGTCA
TATGTGGGTCTTGTACCGCCAGGTGTTGTTTGGTATCCACTGAGGGATTT
CATACCCGGTTCCGCCGAGGCATTGGCCCATTTGGCCCATCTTGGCAAGG
ATGTGACCTTCGTGACCAACAACAGCATCAGTTCGGTGAAGGAGCACATC
GAGAAGTTTGAGAAACAGGGCCATCTAAAGATTGATGAGCATCAAATCGT
TCATCCTGCCCAAACCATCTGCGATCACTTGAGGTCCATTAAATTCGAGG
GACTCATCTACTGCCTGGCCACGTCGCCATTTAAGGAAATCCTCGTAAAT
GCCGGATTTCGTTTGGCCCAAGAGAATGGTTCGGGAATCATCACGAGGCT
GAAGGATCTGCACGAGGCCATCTTCTCTGGCGAATCGGTGGATGCGGTCA
TCATCGACGTTGACTTCAACCTGTCGGCGGCCAAGTTGATGCGTGCCCAT
TTCCAGCTACAGAATCCGAAGTGCCTTTTCCTCGCCGGAGCTGCCGATGC
TTTGATTCCATTTGGCAAGGGTGAAATCATAGGACCTGGAGCCTTTATCG
ACGTGGTGACCCAGGCCGTTGGCCGTCAGCCCATAACCTTGGGCAAACCG
GGCGAGGATCTGCGCAAGCTTCTACTGGAACGCCATCGGGAAATTCCGCC
CAGCCGCGTGCTCTTCGTGGGCGATAGCCTGGCCAGCGATATTGGATTCG
CTCGCGCCAGTGGCTACCAGACGCTCCTCGTCCTTACCGGCGGCACAAAG
CTGGAGGATGTCCAGCGACTGCCGATTGACCATTCCCAGATGCCCGACTA
TCTGGCCGATTGCCTGGGCCAGATAGCAATCAATAATAATCCGGCATCGA
GTAACTCTGACTCGGCGCATTCGGTGGCAAGCTTTCTAGACCAT
BO19617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-RB | 948 | CG10352-PB | 91..945 | 122..976 | 4275 | 100 | Plus |
| CG10352-RB | 948 | CG10352-PB | 47..92 | 17..62 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-RB | 1491 | CG10352-RB | 357..1211 | 122..976 | 4275 | 100 | Plus |
| CG10352-RB | 1491 | CG10352-RB | 313..358 | 17..62 | 230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11875586..11875931 | 976..631 | 1730 | 100 | Minus |
| X | 23542271 | X | 11876449..11876721 | 289..17 | 1365 | 100 | Minus |
| X | 23542271 | X | 11875991..11876201 | 633..423 | 1055 | 100 | Minus |
| X | 23542271 | X | 11876256..11876392 | 424..288 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:59:17 has no hits.
BO19617.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:56 Download gff for
BO19617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RA | 1..960 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:25 Download gff for
BO19617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RB | 357..1211 | 122..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:33 Download gff for
BO19617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10352-RB | 357..1211 | 122..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:33 Download gff for
BO19617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11875583..11875929 | 633..978 | 99 | <- | Minus |
| X | 11875992..11876199 | 425..632 | 100 | <- | Minus |
| X | 11876256..11876390 | 290..424 | 100 | <- | Minus |
| X | 11876449..11876721 | 17..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:25 Download gff for
BO19617.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11769616..11769962 | 633..978 | 99 | <- | Minus |
| arm_X | 11770025..11770232 | 425..632 | 100 | <- | Minus |
| arm_X | 11770289..11770423 | 290..424 | 100 | <- | Minus |
| arm_X | 11770482..11770754 | 17..289 | 100 | | Minus |
BO19617.pep Sequence
Translation from 16 to 994
> BO19617.pep
MSSLTHSIWFSAIAMASLFHLYLHYIWSYVGLVPPGVVWYPLRDFIPGSA
EALAHLAHLGKDVTFVTNNSISSVKEHIEKFEKQGHLKIDEHQIVHPAQT
ICDHLRSIKFEGLIYCLATSPFKEILVNAGFRLAQENGSGIITRLKDLHE
AIFSGESVDAVIIDVDFNLSAAKLMRAHFQLQNPKCLFLAGAADALIPFG
KGEIIGPGAFIDVVTQAVGRQPITLGKPGEDLRKLLLERHREIPPSRVLF
VGDSLASDIGFARASGYQTLLVLTGGTKLEDVQRLPIDHSQMPDYLADCL
GQIAINNNPASSNSDSAHSVASFLDH
BO19617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10352-PB | 315 | CG10352-PB | 31..315 | 36..320 | 1464 | 100 | Plus |
| CG15739-PB | 308 | CG15739-PB | 31..297 | 36..304 | 590 | 45.6 | Plus |
| CG15739-PA | 308 | CG15739-PA | 31..297 | 36..304 | 590 | 45.6 | Plus |
| CG2680-PB | 305 | CG2680-PB | 31..293 | 36..300 | 315 | 34.2 | Plus |
| CG5567-PA | 330 | CG5567-PA | 48..318 | 36..303 | 258 | 27.5 | Plus |
