BO19620.complete Sequence
1210 bp assembled on 2009-05-13
GenBank Submission: KX797634
> BO19620.complete
GAAGTTATCAGTCGACATGGTTAAGGTTGTGGAGGACATCTTTGGTATTG
CGACCAATCCGTTTACCAAACAGGCCCAAGTGATTCGTCGCTACACGATG
ACCAACACCAATCGCCTGTCCGTGGCCATCATCCAGCTGGGCGCAACAAT
CCAGAGCATTCAAGTGCCAGATGCCTATCACCAGTTGTCCGATGTGGTCC
TCGGATTCGATGATGTTGCCGGGTATACGAAATATAGAAATTATCATTTT
GGTTGCACGATTGGCAGAGTCTCGGATGTGGTGGGCAACGGCGAGTTCAT
CATGGACGAGCGACGTGTCGTTGTATCCAAAAATCTCGGCCAGAAACACC
AAACTAATGGTGGCTTTGTGGGCTTCGATCAGGTCATTTGGGATCTGGAA
ATGAAACGACCGGATGGCGTCACCTTGCGTCATATATCCCCGGATGGACA
CGAAGGTTATCCTGGGACCTTGAAAGTATTACTTCACTTCACCATAAATG
ACGACAATCGTTTTTTTATACAAATTGAAGCTACCACTAATCAAACGACG
CCGGTAAATATATCCAATCATATCATCTTTAATCTGGCTGGCCAGTCTAC
CGGAATCAAGGGCATTTTTGACCATCAAATCAATATTGAGGCAATAGAAA
CGATGGAAACATCAAATGGCGACGGACTTCCCACGGGTCGATTTAAGAAC
GTTAATGATTCCGTATACGATATCCGATTGCCAGTATTCATGGGCGACCG
AGTGCGTCAGTTTGAAAAGAAACCGGTAAAGGGTTACGATGTTTGCTTTG
CTCTCGACAAGGAGTTTGATGCAATTAGAACGCGTTATGTGGGCAGATTT
TTGCATCCGGATTCGGGCAGATTTATGGAAATATTCAGCAATCAGCCGTG
TGTTAAATTCACCACCGGCAATTGTTTTCCCCAGGAACCGCTTGGTGAGC
CACCAATATTGGGTAAAAAGTGCACCCGCTATTGGCAACATTGTGGCTTT
AGTCTTCAGCTACTTAACTATCCGGATGCCGTAAATCAGCCGGATTTTCC
ACGCATCTTCATCAATCCGGGCGAGCATTATTTCCATGAAACCATCTACC
ATTTTGGCGTTCAGGAATCGTGGAAATGCTGTGCCGATCCGGAGGAACTG
GAAGCCCTGGGCGAAGAACCACTGCGGAAACCAAAGGCCGTTGCAAGCTT
TCTAGACCAT
BO19620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10996-RA | 1179 | CG10996-PA | 1..1176 | 17..1192 | 5865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10996-RA | 1250 | CG10996-RA | 20..1195 | 17..1192 | 5865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13796444..13797619 | 1192..17 | 5865 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:51 has no hits.
BO19620.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:55 Download gff for
BO19620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10996-RA | 20..1195 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:11 Download gff for
BO19620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10996-RA | 20..1195 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:51 Download gff for
BO19620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10996-RA | 20..1195 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:51 Download gff for
BO19620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13796441..13797619 | 17..1194 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:11 Download gff for
BO19620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13690474..13691652 | 17..1194 | 99 | | Minus |
BO19620.pep Sequence
Translation from 16 to 1210
> BO19620.pep
MVKVVEDIFGIATNPFTKQAQVIRRYTMTNTNRLSVAIIQLGATIQSIQV
PDAYHQLSDVVLGFDDVAGYTKYRNYHFGCTIGRVSDVVGNGEFIMDERR
VVVSKNLGQKHQTNGGFVGFDQVIWDLEMKRPDGVTLRHISPDGHEGYPG
TLKVLLHFTINDDNRFFIQIEATTNQTTPVNISNHIIFNLAGQSTGIKGI
FDHQINIEAIETMETSNGDGLPTGRFKNVNDSVYDIRLPVFMGDRVRQFE
KKPVKGYDVCFALDKEFDAIRTRYVGRFLHPDSGRFMEIFSNQPCVKFTT
GNCFPQEPLGEPPILGKKCTRYWQHCGFSLQLLNYPDAVNQPDFPRIFIN
PGEHYFHETIYHFGVQESWKCCADPEELEALGEEPLRKPKAVASFLDH
BO19620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10996-PA | 392 | CG10996-PA | 1..392 | 1..392 | 2114 | 100 | Plus |
| CG32444-PA | 370 | CG32444-PA | 3..367 | 2..374 | 908 | 43.4 | Plus |
| CG32445-PA | 367 | CG32445-PA | 1..361 | 1..364 | 840 | 45.3 | Plus |
| CG10467-PA | 364 | CG10467-PA | 1..362 | 1..365 | 837 | 46.2 | Plus |
| CG4988-PA | 368 | CG4988-PA | 3..365 | 2..372 | 825 | 42.6 | Plus |
