BO19623.complete Sequence
1186 bp assembled on 2009-05-13
GenBank Submission: KX796138
> BO19623.complete
GAAGTTATCAGTCGACATGAATTCTAATTACACAATATTAAACATCCGGG
CTCACTCCTGGGCCGAGAAGGACAATTTGGTATTTCCAACTATTACCAAG
CCCGTTTCGAATGGCTGGTTCGCCTGGTCGCCAATCGGGCAATTCGAACC
AAATTCTCAAAAAGTGCCCTACGTCGTGGTGCCGCCAAGCATCAAATTTC
CCATTTCTCTTCGGTACAAAGATTCACCGCCGAAGCTGGAAAAGAAGCCC
AACATTTTTCTGGACAACATGCTCCAGTATATAGAATCTTCGTCGTACAT
GTACGTTATGGTAAGAAACAACCAGCAGGCACAGCTAAATGCCAATATAG
TGTGCACCAGCGAAGTCCTGGAGCTGATGATGTGTGCTCCCTACGAAAAG
AAGACTGGATGGTCATTGGGTGTCACCCGGTATCGCAACACAATGTACAT
TTGCCGCATTGATGTTGAACAACCCGACCCCATTGATCAGGACAATCTGA
AGAGGGCCATGCAAGAATTTTGGCTTAGGAATCTTCGAACCCATTGTGTT
TTTGAAAACGGCATTAAGATGCACCAGCACAATCAATCTTCTGAAGAACA
TTTACGCTTTCATGGTGTATTTTCCTTTGATTTGAATGGTAATCGAGTTC
TATTTGATTCTCCAGTACTAGCCGAGATGCCAAGCACAACATTGAATGGG
TCTGCTCTAAGCTGGGTAGACCTGCAGATACGCCCTATGTTCATGAGTCG
ACTGGATTGGCCAGAGCACAATCGCACAGAGGCCCTTAAGTGGTGGGTCA
AGTGTTTTCTGTTGGGAATCGAAAGCCTCTATATAGCCCGCCGCGATGAA
AACGCCCATGTGCACAACATTGAAAAGACTTTGGTGCGGGATTTATGGAA
GTCTTGCGAAAAAGATTGGTCGCCCACAGTGTGCGCCAACTTCATGATTT
ACCTACTCAATTGTATTTCCCAAGTTATGGCGCCGATCGACTGCCCCAGC
ACCGTTTACCTTTTTCAGTTCGACGCGAGCCAAGGAACAGTATCATACAA
GGGCTTGCGAGGGCGCAATCAGTACACGTTCGTTTCGGACTGGTTCCGGA
TGATGCTGGACGATCACACGAACGATATGTGTAAGACACCGAATTTGCAA
ACCATGTCTTCTATAGTTGCAAGCTTTCTAGACCAT
BO19623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cuff-RA | 1155 | CG13190-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cuff-RA | 1295 | CG13190-RA | 45..1196 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11886111..11886648 | 17..554 | 2690 | 100 | Plus |
| 2R | 25286936 | 2R | 11887244..11887504 | 908..1168 | 1305 | 100 | Plus |
| 2R | 25286936 | 2R | 11886920..11887134 | 694..908 | 1075 | 100 | Plus |
| 2R | 25286936 | 2R | 11886706..11886851 | 549..694 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:15:45 has no hits.
BO19623.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:00 Download gff for
BO19623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13190-RA | 45..1196 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:25 Download gff for
BO19623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 45..1196 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:39 Download gff for
BO19623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cuff-RA | 45..1196 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:39 Download gff for
BO19623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11886111..11886648 | 17..554 | 100 | -> | Plus |
| 2R | 11886712..11886850 | 555..693 | 100 | -> | Plus |
| 2R | 11886920..11887133 | 694..907 | 100 | -> | Plus |
| 2R | 11887244..11887504 | 908..1170 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:25 Download gff for
BO19623.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7773616..7774153 | 17..554 | 100 | -> | Plus |
| arm_2R | 7774217..7774355 | 555..693 | 100 | -> | Plus |
| arm_2R | 7774425..7774638 | 694..907 | 100 | -> | Plus |
| arm_2R | 7774749..7775009 | 908..1170 | 99 | | Plus |
BO19623.pep Sequence
Translation from 16 to 1186
> BO19623.pep
MNSNYTILNIRAHSWAEKDNLVFPTITKPVSNGWFAWSPIGQFEPNSQKV
PYVVVPPSIKFPISLRYKDSPPKLEKKPNIFLDNMLQYIESSSYMYVMVR
NNQQAQLNANIVCTSEVLELMMCAPYEKKTGWSLGVTRYRNTMYICRIDV
EQPDPIDQDNLKRAMQEFWLRNLRTHCVFENGIKMHQHNQSSEEHLRFHG
VFSFDLNGNRVLFDSPVLAEMPSTTLNGSALSWVDLQIRPMFMSRLDWPE
HNRTEALKWWVKCFLLGIESLYIARRDENAHVHNIEKTLVRDLWKSCEKD
WSPTVCANFMIYLLNCISQVMAPIDCPSTVYLFQFDASQGTVSYKGLRGR
NQYTFVSDWFRMMLDDHTNDMCKTPNLQTMSSIVASFLDH
BO19623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cuff-PA | 384 | CG13190-PA | 1..384 | 1..384 | 2086 | 100 | Plus |
| CG9125-PA | 375 | CG9125-PA | 15..371 | 13..364 | 161 | 21.6 | Plus |
