BO19629.complete Sequence
994 bp assembled on 2009-05-13
GenBank Submission: KX796975
> BO19629.complete
GAAGTTATCAGTCGACATGTCATGCAAGAATTGCCCTCCCTACAAGAACT
CCGAATTGGGCATCTTCTTTCCGGATTGCTTCGAACGCGTCAGCGGTCAT
TGCAACAAGAAGAATCCCGGCAATGTCCAGAATCTCCACATCCTGGCCCA
TCGGGTGATGCCCAAATTCTACGATGGCATCGAACTGGACTACCTCCACC
GCCTGGCACCCAACAAATATATCACGGCCGCCTGGGTTCTCAGTCACATC
AGGCCATCGGGTTTTCGCTTCGGCGGACTATACACGTTTCGGGTTCAAGA
CGATACTATGTACACCCCAACCATTATGGGCGACATACATCCCACTTCAC
TCGCTGCCAACCTGAACATACTGTACTATCCTTTTCAATCCCTTCGCATG
GAGGCCGTGCTGCAGAAGGCCAGGGAGGCCGCGGTGGAGAGCCAGTATAC
GATCGAGTGGACGAGGCCATGCGACACGTGGACCGCCAACTTTTACAATG
TGCGGAATGAAAGTGGACGTTGCACAATGTCCGTGATGAGATCGGTATCC
GCACACTGGGCCCTCGGCGGGGAACTTCTACTGGAGTGGAACGATCCCCA
GAAACTGACTCCGGATCTGGCGCTCGCAGCACGTTACTCCCATTATAACT
ATTCCTTGGCTGCCACCGCATCGAGGCAGGGATTGGATGTCACCTACTGG
CAGCGCATTCATCCCCATATCCAGATGGCCAATCTCTTGGCGTGGAATCG
TAATACCCGAAAGACCATTGCCACGATATGCTATCAATGGAACTTCTGGA
ACTCAGCCGTCCATGGGATGTTCGATTCGGATGCCTCCGTGGGCTTCATG
TGGACAAAATACCTGACGCATTTGCCACTGCAAATGGGTTTCAGTGTAGT
GATGAATCTGCCCACAGATCGATTTGCTTTCGGCATGCGTTTTGTTTTGG
ACCCAAGTGGATTGAGACGTGGCGAGGCAAGCTTTCTAGACCAT
BO19629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-RB | 963 | CG4520-PB | 1..960 | 17..976 | 4800 | 100 | Plus |
CG4520-RA | 963 | CG4520-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-RB | 1499 | CG4520-RB | 130..1094 | 12..976 | 4810 | 99.9 | Plus |
CG4520-RA | 1171 | CG4520-RA | 130..1094 | 12..976 | 4810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15745171..15745494 | 310..633 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 15744783..15745081 | 12..310 | 1480 | 99.7 | Plus |
3R | 32079331 | 3R | 15745551..15745776 | 633..858 | 1130 | 100 | Plus |
3R | 32079331 | 3R | 15745829..15745946 | 859..976 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:27:26 has no hits.
BO19629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:47 Download gff for
BO19629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1094 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:01:22 Download gff for
BO19629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1094 | 17..978 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:19:34 Download gff for
BO19629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4520-RA | 135..1094 | 17..978 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:19:34 Download gff for
BO19629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15745552..15745776 | 634..858 | 100 | -> | Plus |
3R | 15745829..15745946 | 859..978 | 98 | | Plus |
3R | 15744788..15745081 | 17..310 | 100 | -> | Plus |
3R | 15745172..15745494 | 311..633 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:01:22 Download gff for
BO19629.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11570510..11570803 | 17..310 | 100 | -> | Plus |
arm_3R | 11570894..11571216 | 311..633 | 100 | -> | Plus |
arm_3R | 11571274..11571498 | 634..858 | 100 | -> | Plus |
arm_3R | 11571551..11571668 | 859..978 | 98 | | Plus |
BO19629.pep Sequence
Translation from 16 to 994
> BO19629.pep
MSCKNCPPYKNSELGIFFPDCFERVSGHCNKKNPGNVQNLHILAHRVMPK
FYDGIELDYLHRLAPNKYITAAWVLSHIRPSGFRFGGLYTFRVQDDTMYT
PTIMGDIHPTSLAANLNILYYPFQSLRMEAVLQKAREAAVESQYTIEWTR
PCDTWTANFYNVRNESGRCTMSVMRSVSAHWALGGELLLEWNDPQKLTPD
LALAARYSHYNYSLAATASRQGLDVTYWQRIHPHIQMANLLAWNRNTRKT
IATICYQWNFWNSAVHGMFDSDASVGFMWTKYLTHLPLQMGFSVVMNLPT
DRFAFGMRFVLDPSGLRRGEASFLDH
BO19629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4520-PB | 320 | CG4520-PB | 1..320 | 1..320 | 1754 | 100 | Plus |
CG4520-PA | 320 | CG4520-PA | 1..320 | 1..320 | 1754 | 100 | Plus |
Tom40-PC | 344 | CG12157-PC | 58..338 | 32..306 | 204 | 24.8 | Plus |
Tom40-PB | 344 | CG12157-PB | 58..338 | 32..306 | 204 | 24.8 | Plus |
Tom40-PA | 344 | CG12157-PA | 58..338 | 32..306 | 204 | 24.8 | Plus |