BO19630.complete Sequence
1195 bp assembled on 2009-05-13
> BO19630.complete
GAAGTTATCAGTCGACATGGTGGGAGCCATTTTCTTCGTCATCATCAAGG
GCACCGTCGATTTGGGCGGATTGGGCGTGGTTATTCAGCGGAATTTCGAC
ACCGGACGCATGGAGTGGCCTGAATTGACGCTGGATCCCAAGGTGCGAAT
GTCCATGTTGGCAATGATGGTGGGCAACGTGGCACACAACTCGTATAACC
TCGGATGCAATCAGATCATCACCCAGCGATACCTGTCACTGCCCGGATTA
AAGCAGATGGCCCAGTGCTCGTTCCTCTTCATTTCCGGATTGGTTCTTCT
GATGGCCATCTGCATGTACAACGGCCTCCTGCTATCCGCAACCTACTACG
ACTGTGATCCATTGACCACGAAGTTGGCGGTGGCCAAGGATCAATTGGTT
CCCCTGCTCGTGGTGCAATCCATGAGCGCATTTCCCGGAGTTCCCGGCAT
GTTTGTGGCCGGAGTGTTTAGTGCCGCCCTCAGTTCTCTGTCCACGGGCA
TGAATTCCCTAGCCGCTGTTTTCCTAGAGGATTACATCAGGCCCTTGACG
AGGAAGCCGCTTACGGAACACCAAACTGCTGTTATCATGCGTGTTTGTAC
GGTTTTAATTGGAGTCATGAGTGTGGCCCTGGTTTTTGTTGTGGAGCAGA
TGGGCTCCCATGTAATGCAGCTTTCCATGACCGTTGGATCGGTGGTACAG
GGTCCCTTGCTGGCTCTTTTCGTTATGGGCCTTCTGTGCCCAAGCATCAA
CTCAAAGAGCGCCATAGTGGGATCCCTTTGCTCCTTCTTCTTCATGGGTT
GGCTGTGCCTATCTGCACAATTGGCCATTAATTCCGGCGAAATGCAATTC
GAAAGCAAACCAGTTAGCGTAGAAGGCTGTGATTATGAGTTTGATCGCGA
CCTGGTGACTCCTGCCAACGTGACCATTCCCTTGACTGAATCTGGATCGC
TCAGTTTCGCGCAGGAGCTGTACCACGTCTCCTTTATGTTCTATAGCGTT
ATGGGAGCCGCGGTGGGCGTGATTACCGCCCACCTGGCTGGCTTCGTCTT
TGGTCGCAATACGGCCGATGATGTGGATATTGAGTTGTTGTCACCTTGCA
TTCGCAGATTCCAAAAGAGCAGCTATTCCAGCGTTAAGCTGGACGAGAAT
ACCTTGAAGAGTTTCAATGCGAAGACGGCAAGCTTTCTAGACCAT
BO19630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RB | 2088 | CG42235-PB | 925..2085 | 17..1177 | 5805 | 100 | Plus |
| CG42235-RA | 2088 | CG42235-PA | 941..2042 | 33..1134 | 1655 | 76.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RB | 2359 | CG8934-RA | 1149..2309 | 17..1177 | 5805 | 100 | Plus |
| CG42235-RA | 2561 | CG8932-RA | 1165..2266 | 33..1134 | 1655 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25913870..25914255 | 372..757 | 1930 | 100 | Plus |
| 3R | 32079331 | 3R | 25913565..25913818 | 124..377 | 1255 | 99.6 | Plus |
| 3R | 32079331 | 3R | 25914558..25914790 | 945..1177 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 25911814..25912198 | 372..756 | 965 | 83.4 | Plus |
| 3R | 32079331 | 3R | 25914310..25914499 | 756..945 | 950 | 100 | Plus |
| 3R | 32079331 | 3R | 25913337..25913443 | 17..123 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 25911254..25911344 | 33..123 | 305 | 89 | Plus |
| 3R | 32079331 | 3R | 25911404..25911640 | 124..360 | 225 | 73 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:30:52 has no hits.
BO19630.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:46 Download gff for
BO19630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1141..2301 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:44 Download gff for
BO19630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1141..2301 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:20:10 Download gff for
BO19630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RB | 1149..2309 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:20:10 Download gff for
BO19630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25913565..25913814 | 124..373 | 100 | -> | Plus |
| 3R | 25914312..25914499 | 758..945 | 100 | -> | Plus |
| 3R | 25914559..25914790 | 946..1179 | 99 | | Plus |
| 3R | 25913872..25914255 | 374..757 | 100 | -> | Plus |
| 3R | 25913337..25913443 | 17..123 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:44 Download gff for
BO19630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21739059..21739165 | 17..123 | 100 | -> | Plus |
| arm_3R | 21739287..21739536 | 124..373 | 100 | -> | Plus |
| arm_3R | 21739594..21739977 | 374..757 | 100 | -> | Plus |
| arm_3R | 21740034..21740221 | 758..945 | 100 | -> | Plus |
| arm_3R | 21740281..21740512 | 946..1179 | 99 | | Plus |
BO19630.pep Sequence
Translation from 16 to 1195
> BO19630.pep
MVGAIFFVIIKGTVDLGGLGVVIQRNFDTGRMEWPELTLDPKVRMSMLAM
MVGNVAHNSYNLGCNQIITQRYLSLPGLKQMAQCSFLFISGLVLLMAICM
YNGLLLSATYYDCDPLTTKLAVAKDQLVPLLVVQSMSAFPGVPGMFVAGV
FSAALSSLSTGMNSLAAVFLEDYIRPLTRKPLTEHQTAVIMRVCTVLIGV
MSVALVFVVEQMGSHVMQLSMTVGSVVQGPLLALFVMGLLCPSINSKSAI
VGSLCSFFFMGWLCLSAQLAINSGEMQFESKPVSVEGCDYEFDRDLVTPA
NVTIPLTESGSLSFAQELYHVSFMFYSVMGAAVGVITAHLAGFVFGRNTA
DDVDIELLSPCIRRFQKSSYSSVKLDENTLKSFNAKTASFLDH
BO19630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-PB | 695 | CG42235-PB | 309..695 | 1..387 | 1958 | 100 | Plus |
| CG42235-PA | 695 | CG42235-PA | 309..694 | 1..386 | 1528 | 74.9 | Plus |
| CG42235-PC | 689 | CG42235-PC | 309..678 | 1..377 | 848 | 44.2 | Plus |
| CG6723-PA | 587 | CG6723-PA | 199..558 | 1..365 | 834 | 45.5 | Plus |
| CG42235-PE | 691 | CG42235-PE | 309..678 | 1..375 | 820 | 44.6 | Plus |
