BO19633.complete Sequence
1390 bp assembled on 2009-05-13
> BO19633.complete
GAAGTTATCAGTCGACATGCGATTGTTTGGAGCTAGCTTATTTGTTCTCA
AAGCGATTATTTGGCTTCCCATTGCCGTTTATGTTCCCGCTTTGACCTTC
AATCAAGTGTCCGGAATTGGTATTCATATCATCACTCCAATAGTGGTCAT
CATTTGTACTTTCTACACCTGCGTGGGCGGAATTAAGGGCGTGGTCTACA
CAGATGTGGTTCAGAGCGTTATTATGTATGGATCCTTGATTGTGATCATG
ATCAAGGGAACCTTGGATTTAGGTGGATTTGGAACTGTGTGGAGGATTAA
TCAAGAGGGCGGACGCCTAAATACCCCGGAATGGAGTTTGGATCCCACAG
TTCGACTGAGTGTTTTCTCCGTGTTTGTTGGTGGAACTTTCTTTAAGTTG
CAAAGCACCTCGATCAACCAGGCAACAGTTCAACGTTTTATGTCCTTGCC
ATCCCTGAAAGCCATCAAACAGACCCTCTTCACATTCTCCATTGGACTGG
TACTGCTCTACATGGGATGCGTCTATGTGGGATTGGTGTGCTATGCCACC
TATTATGATTGCGATCCCATGTCTACAGGACTTGCAGGACGTCGGGACCA
GCTGGTTCCCCTGCTAGTGATGCGGGTGCTGGGGGTTGTGCCTGGTCTGC
CAGGACTCTTTGTCTCAGCTGTGTTTAGCGCGGCCTTGAGCTCGTTATCC
ACCCTCCTCAACTCTCTGGCCGCTGTTATCCTGGAGGACTTTGTTAGGCC
GCGCATGGGAAAATCGATGAAGGAGAACCACGTGGCTCTGACCATGCGAG
TGGTGGTGGTAACCTTTGGCATAAGCTCAATTTTTATGGTCTACGTGGTT
GAAAAGCTGGGCATGGTACTGCAATTGTCGGCGACACTTCAGTCAAGTTT
ATATGGACCGATGTTGGGCATTTTCACGGTGGGAATGCTAATGCCATGGG
TGGGCGAAAAGTGCGTTTTCATAGGCAGCGTTGCCTCCTTTTTGACCATG
GCCTGGATAGCGGTTAATGCTCAAATTGCCAACATAACAGGTTCCTTCCG
ACACACCAAGCTGCCAGTTTCCGTGGACAATTGTGACTATGATTTCGATA
TGAATCGTTACTTAAACTCCACTTTAGAATACGAACCTCACAGTGGATCA
TCTATATATCACATGTCATTCCTGTTATACGCTATGTTGGGAGCCCTACT
TACAATTATAACTTCAAACTTGGCTACTTTCGTCTACGGACGTCAGGATA
TCAAGAACGTTGATGAGAATCTTCTGGCACCAGTTGTTCAACGCTACTTG
CGAAAAAACAATTACTATCAGAGCGTGGAGCTCAAGAAAGTTGAGGTACC
AAAACTCAGTGAAAGTTCCGATGCAAGCTTTCTAGACCAT
BO19633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RE | 2076 | CG42235-PE | 718..2073 | 17..1372 | 6780 | 100 | Plus |
| CG42235-RC | 2070 | CG42235-PC | 763..936 | 62..235 | 240 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-RE | 2500 | CG42235-RE | 942..2297 | 17..1372 | 6780 | 100 | Plus |
| CG42235-RC | 2328 | CG42235-RC | 987..1160 | 62..235 | 240 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25919935..25920315 | 581..961 | 1905 | 100 | Plus |
| 3R | 32079331 | 3R | 25919298..25919573 | 55..330 | 1380 | 100 | Plus |
| 3R | 32079331 | 3R | 25919630..25919879 | 331..580 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 25920603..25920843 | 1132..1372 | 1205 | 100 | Plus |
| 3R | 32079331 | 3R | 25920370..25920541 | 960..1131 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 25919202..25919240 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:48:56 has no hits.
BO19633.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:15 Download gff for
BO19633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 934..2289 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:01 Download gff for
BO19633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 934..2289 | 17..1374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:30 Download gff for
BO19633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42235-RE | 942..2297 | 17..1374 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:30 Download gff for
BO19633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25919202..25919240 | 17..55 | 100 | -> | Plus |
| 3R | 25919299..25919573 | 56..330 | 100 | -> | Plus |
| 3R | 25919630..25919879 | 331..580 | 100 | -> | Plus |
| 3R | 25919935..25920315 | 581..961 | 100 | -> | Plus |
| 3R | 25920372..25920541 | 962..1131 | 100 | -> | Plus |
| 3R | 25920603..25920843 | 1132..1374 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:01 Download gff for
BO19633.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21744924..21744962 | 17..55 | 100 | -> | Plus |
| arm_3R | 21745021..21745295 | 56..330 | 100 | -> | Plus |
| arm_3R | 21745352..21745601 | 331..580 | 100 | -> | Plus |
| arm_3R | 21745657..21746037 | 581..961 | 100 | -> | Plus |
| arm_3R | 21746094..21746263 | 962..1131 | 100 | -> | Plus |
| arm_3R | 21746325..21746565 | 1132..1374 | 99 | | Plus |
BO19633.pep Sequence
Translation from 16 to 1390
> BO19633.pep
MRLFGASLFVLKAIIWLPIAVYVPALTFNQVSGIGIHIITPIVVIICTFY
TCVGGIKGVVYTDVVQSVIMYGSLIVIMIKGTLDLGGFGTVWRINQEGGR
LNTPEWSLDPTVRLSVFSVFVGGTFFKLQSTSINQATVQRFMSLPSLKAI
KQTLFTFSIGLVLLYMGCVYVGLVCYATYYDCDPMSTGLAGRRDQLVPLL
VMRVLGVVPGLPGLFVSAVFSAALSSLSTLLNSLAAVILEDFVRPRMGKS
MKENHVALTMRVVVVTFGISSIFMVYVVEKLGMVLQLSATLQSSLYGPML
GIFTVGMLMPWVGEKCVFIGSVASFLTMAWIAVNAQIANITGSFRHTKLP
VSVDNCDYDFDMNRYLNSTLEYEPHSGSSIYHMSFLLYAMLGALLTIITS
NLATFVYGRQDIKNVDENLLAPVVQRYLRKNNYYQSVELKKVEVPKLSES
SDASFLDH
BO19633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42235-PE | 691 | CG42235-PE | 240..691 | 1..452 | 2292 | 100 | Plus |
| CG42235-PC | 689 | CG42235-PC | 240..671 | 1..433 | 1194 | 52.4 | Plus |
| CG42235-PB | 695 | CG42235-PB | 240..683 | 1..439 | 1060 | 47.1 | Plus |
| CG9657-PB | 601 | CG9657-PB | 143..584 | 1..436 | 1059 | 45.5 | Plus |
| CG9657-PA | 601 | CG9657-PA | 143..584 | 1..436 | 1059 | 45.5 | Plus |
