BO19637.complete Sequence
1588 bp assembled on 2009-05-13
GenBank Submission: KX796209
> BO19637.complete
GAAGTTATCAGTCGACATGGCTTCATCCACAGGTCTCCTGGTGGTGTCCA
ACATCAAGCACCTTGGCAAATCCCTGCGAGCCATCGAGAAGTACGTGAAT
TCACTGTACATCCACCTAAATGTGGCGGGGTCAACGTCCACGACGTCACC
AGTTCCACCGCCTCCGGTTTGGGGTCGTCTAATCTCGCAGCTGTACGCCA
ACAGCAGCAGCTATGTGGGCAAGCAGTTGGACCTTCGCGTCCTTGTCTCT
CCCCTACGACCAGGTGCCAATGGATCCCTGAAGTTGCGCCAGCCCGTCGA
CCTAATCTTCTCGGATGCACATCATCCGGAGCTGTGCGACAGGCTTCGCG
CGGATCTTAACATCAGCAAGCCAACAATCTTCCTGGATGACTCGGTCATC
TCGGATTTAAGTGCCCAGCAGGATGACACCCAGCCGCCTAAGGTGTATCC
CTCGGTTGTCCTGGGCGGAACATTCGATCGCATCCATCTGGGACACAAGA
TATTCCTCACCCAGGCTGTACTGCGCACCTGCAAGCGTTTGGTTGTGGGC
GTAACCACCTCCGCCATGACGAAGGGAAAGACGCTGCCGGACTTGATTTT
GCCCGTGGAAGAGCGCATCGCCCGGCTAAGGGAGTTCCTGGTGGACATAG
ATGATACGCTGCAGTACGAAATTGTGCCCATCGATGATCCCTTTGGTCCC
ACGCAAGTGGATCCTGACCTGGACATGATTGTGGTCAGTGCGGAGACGTT
GCGAGGAGGGCAGAAGGTCAACGAGGTACGCTCCGCTAAGCAACTGCGCG
AGCTGGAGATCTTTGTGATTGACATTGTTGAAAGCAACGTGCATGATGGC
ATCCACGAGACCAAGGTCAGCTCGAGTAACACACGCATCGATCTGCTGGG
AACCCGCTGGAGAAGGCCGGAGCCACGACCACAGCTCCCGCCGCGCCCTT
ACATTATTGGACTCACTGGCGGCATCGCATCTGGCAAGAGCAAGATGGGC
GAGAGATTGGCCAACATGGGCGCCCACGTGATCGACTGCGATAAGGTGGC
GCACGATGTTTACGAACCTGGTCAGTTGTGCTACACCCGAATTGTGCAGC
ACTTCGGACAGGGTATTGTTTCAGACGATGGTCGCATCGATCGGTCCAAG
CTGGGACCCTTGGTGTTTGCCGATCCCAAGCAGTTGCAAGCACTCAACGG
CATTGTCTGGCCGGAACTTATTGCGGAGGTTAACAGGCGGCTGGATGCAC
TGCGTTCCCAGGCGGACGTGCCGCGTGTGGTGGTCCTGGAGGCAGCGGTG
CTGCTGCGAGCGGGCTGGGAGACCAATTGCCATGAGGTGTGGTCCATGAT
TGTGCCACCGGATGAGGCTGTGCGGCGGATTATTGAGCGCAACAAGTTGA
GCGAAGTGGAGGCCCAAAAGCGACTGGCCAGTCAGGTGCCCAATTCTGAG
ATCGTGGCCAAGTCGCATGTGATATTCAGTTCGCAATGGGATCACGAATT
CACCCAGAAACAGGCGGAGCGTGCGTGGAAAATGCTTACCAAGGAACTGG
ACTCTTACCAGAGCAGCCTTGCAAGCTTTCTAGACCAT
BO19637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppat-Dpck-RA | 1557 | CG10575-PA | 1..1554 | 17..1570 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppat-Dpck-RA | 1711 | CG10575-RA | 36..1589 | 17..1570 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5767139..5768134 | 1570..575 | 4980 | 100 | Minus |
| 3L | 28110227 | 3L | 5768193..5768759 | 583..17 | 2820 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:11:00 has no hits.
BO19637.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:14 Download gff for
BO19637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10575-RA | 1..1554 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:34 Download gff for
BO19637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 36..1589 | 17..1572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:06 Download gff for
BO19637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppat-Dpck-RA | 36..1589 | 17..1572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:06 Download gff for
BO19637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5767137..5768133 | 576..1572 | 99 | <- | Minus |
| 3L | 5768201..5768759 | 17..575 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:34 Download gff for
BO19637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5760237..5761233 | 576..1572 | 99 | <- | Minus |
| arm_3L | 5761301..5761859 | 17..575 | 100 | | Minus |
BO19637.pep Sequence
Translation from 16 to 1588
> BO19637.pep
MASSTGLLVVSNIKHLGKSLRAIEKYVNSLYIHLNVAGSTSTTSPVPPPP
VWGRLISQLYANSSSYVGKQLDLRVLVSPLRPGANGSLKLRQPVDLIFSD
AHHPELCDRLRADLNISKPTIFLDDSVISDLSAQQDDTQPPKVYPSVVLG
GTFDRIHLGHKIFLTQAVLRTCKRLVVGVTTSAMTKGKTLPDLILPVEER
IARLREFLVDIDDTLQYEIVPIDDPFGPTQVDPDLDMIVVSAETLRGGQK
VNEVRSAKQLRELEIFVIDIVESNVHDGIHETKVSSSNTRIDLLGTRWRR
PEPRPQLPPRPYIIGLTGGIASGKSKMGERLANMGAHVIDCDKVAHDVYE
PGQLCYTRIVQHFGQGIVSDDGRIDRSKLGPLVFADPKQLQALNGIVWPE
LIAEVNRRLDALRSQADVPRVVVLEAAVLLRAGWETNCHEVWSMIVPPDE
AVRRIIERNKLSEVEAQKRLASQVPNSEIVAKSHVIFSSQWDHEFTQKQA
ERAWKMLTKELDSYQSSLASFLDH
BO19637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppat-Dpck-PA | 518 | CG10575-PA | 1..518 | 1..518 | 2657 | 100 | Plus |
| Dpck-PA | 236 | CG1939-PA | 2..196 | 312..507 | 243 | 29.9 | Plus |
