BO19646.complete Sequence
1366 bp assembled on 2009-05-13
GenBank Submission: KX794591
> BO19646.complete
GAAGTTATCAGTCGACATGAAGGAGTGGCTGAAGATCTCCTGCCTCCTCT
GTGTCTTTGGCTGCATCCGCGAGATCCGTCCGTCGGAGCCCTACGTCACG
GAGTACCTGCTGGGTCCCTGGCGGAATATCACGGAGCAGCAGCTAACGCA
CGATGTTTACCCAGTGGGAACCTATTCCTACCTGGTGCAGTTGGTCTTTG
TATTTCTCATAACAGATTTTCTCAGATACAAGCCGCTGATCATCACAATT
GGAGCTGCGGGTGTGATAATATGGAGCATGCTCATCTGGACCACCAGCTT
GCTGTCGCTTCAGATCCTGGAGTTCTTCTTCGGCACTTACATGGCCGCAG
AGGTGGCCTACTATACGTACATCTATGCCAAAGTGGACAAGAAATACTAT
GCCAGAGTGACCTCCCACACCCGAGCAGCCATGTTTGCAGGCAAACTGGT
TTCCGGCATCACTTCCCAACTTATGCTCAATCTGGAGCTGATGAACTACA
AGGAGCTTAACTATATAACGCTGGGCACTCAGATTATAGCCATGCTTTGG
GCCTTTGGCCTGCCCCGCGTGGATAGGAGTCTTTACTTTCATCGGGAGCA
GTTGTCCATTACGGAGCCGCAGACTCAGCTACCCGGGGTGGGAAACCTGG
CTGAGATGGATCAGCAGCAGGAGAATACTCAGAAGCAGCCAGGAGCACTG
AGCCTTCTTTGGCTACATTTTCGGAATGCATACACCAATCCGCGAGTCGT
TCAGTGGAGTCTGTGGTACGCCATTGGACTGGCTGGTTACCTGCAGGTCA
CTTACTACGTTCAGGTTCTGTGGAAAGTGATCGAACCGGAGCCTGTTATT
GCGTGGAACGGCGCCGTTGATGCTGTCCTGACAGCTCTGGCTGCTCTAAG
TGCTTTGGCCGCTGGTTATCTGCACACCGGAAGGCTCAGACCGCGAGCAT
CTCTTCTGATCCTGGGCATTCTGTCCGCCGTGGAGGGCGGATGTGTGCTG
ATCTGTTGCTGGACACAGGACATCTACTGGTCGTATGCGGGCTTTGTGCT
CTTCGGCGCCCTCTACGGCTTTACCATCACGGTGGCGAGTGCTGAAGTGG
CCAGAAATCTGGAGGAGGAAAGCTTCGGCCTTGTCTTTGGTGTGAACACC
TTTGTGGCCCTCATTTTCCAGTCACTGTTAACCATAATCTTTGTCACGGA
CACTGGTTTTGAGCTCGATCCCGTTGGCCAGTACACGGCGTATGCATTCT
ATTTTATTGGCGTCGGCGTCTTGTATCTGATATCCGTGCTGATTGAGTAC
TTAATGTGCCGCAACAACGACGTCGAAAAGCTGGAAAATTCACTGGATGC
AAGCTTTCTAGACCAT
BO19646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:55:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6574-RA | 1335 | CG6574-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG14694-RA | 1341 | CG14694-PA | 334..435 | 350..451 | 255 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6574-RA | 1962 | CG6574-RA | 376..1707 | 17..1348 | 6660 | 100 | Plus |
| CG14694-RA | 1369 | CG14694-RA | 344..445 | 350..451 | 255 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:55:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10861105..10861666 | 1089..528 | 2810 | 100 | Minus |
| 3R | 32079331 | 3R | 10861725..10862030 | 527..222 | 1530 | 100 | Minus |
| 3R | 32079331 | 3R | 10860786..10861046 | 1348..1088 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 10862488..10862613 | 142..17 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 10862344..10862429 | 225..140 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 10859305..10859406 | 451..350 | 255 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:55:07 has no hits.
BO19646.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:14 Download gff for
BO19646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 376..1707 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:45 Download gff for
BO19646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 376..1707 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:43 Download gff for
BO19646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6574-RA | 376..1707 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:43 Download gff for
BO19646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10862488..10862613 | 17..142 | 100 | | Minus |
| 3R | 10860783..10861044 | 1090..1350 | 99 | <- | Minus |
| 3R | 10861105..10861666 | 528..1089 | 100 | <- | Minus |
| 3R | 10861725..10862026 | 226..527 | 100 | <- | Minus |
| 3R | 10862344..10862426 | 143..225 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:45 Download gff for
BO19646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6686505..6686766 | 1090..1350 | 99 | <- | Minus |
| arm_3R | 6686827..6687388 | 528..1089 | 100 | <- | Minus |
| arm_3R | 6687447..6687748 | 226..527 | 100 | <- | Minus |
| arm_3R | 6688066..6688148 | 143..225 | 100 | <- | Minus |
| arm_3R | 6688210..6688335 | 17..142 | 100 | | Minus |
BO19646.pep Sequence
Translation from 16 to 1366
> BO19646.pep
MKEWLKISCLLCVFGCIREIRPSEPYVTEYLLGPWRNITEQQLTHDVYPV
GTYSYLVQLVFVFLITDFLRYKPLIITIGAAGVIIWSMLIWTTSLLSLQI
LEFFFGTYMAAEVAYYTYIYAKVDKKYYARVTSHTRAAMFAGKLVSGITS
QLMLNLELMNYKELNYITLGTQIIAMLWAFGLPRVDRSLYFHREQLSITE
PQTQLPGVGNLAEMDQQQENTQKQPGALSLLWLHFRNAYTNPRVVQWSLW
YAIGLAGYLQVTYYVQVLWKVIEPEPVIAWNGAVDAVLTALAALSALAAG
YLHTGRLRPRASLLILGILSAVEGGCVLICCWTQDIYWSYAGFVLFGALY
GFTITVASAEVARNLEEESFGLVFGVNTFVALIFQSLLTIIFVTDTGFEL
DPVGQYTAYAFYFIGVGVLYLISVLIEYLMCRNNDVEKLENSLDASFLDH
BO19646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6574-PA | 444 | CG6574-PA | 1..444 | 1..444 | 2311 | 100 | Plus |
| CG14694-PA | 446 | CG14694-PA | 1..432 | 1..429 | 1354 | 58.3 | Plus |
| CG17036-PB | 432 | CG17036-PB | 1..421 | 1..434 | 995 | 45.2 | Plus |
| CG17036-PA | 432 | CG17036-PA | 1..421 | 1..434 | 995 | 45.2 | Plus |
