BO19649.complete Sequence
1300 bp assembled on 2010-11-19
GenBank Submission: KX793885
> BO19649.complete
GAAGTTATCAGTCGACATGATATTCGCTCGGTGGACGCGCAAACAAATGC
TCACAATGTTTGGCTTGGGAGCTGGGCTGCTGGGCCTTGTGATTGTGATC
GGTGTGCTCAACAGCGGCGTGTCCTCGAAGGACCTCGACTGGAAGGAGGC
GTCCAGATCGAAGTGCTTCAAGACGCGTCCCAACACCACGCACTCCACCT
TGGAACTGGTGCACATTGTGTTCAGACATGGCATTCGCACCCCAGTGGAC
ACTTATCCCAAGGATCCCTACTTAAACGACGGCTTCAAGCCAACGGGCTG
GGGACATGTGACTAACTCAGGAAAACGGGAACTCTTCGAAATGGGTCGCT
GGCTGAATCGAAGATACGGCGAGTTTATGGGTCCTTATTACAGACCGGAT
CGCCTGCATGCCCAAGCCACTGCCTCTCCGAGGGCCATGATGTCTTTGCA
AACAACACTGGCCAGCATGTTTGAGCCGCGGGGAACCCCCATGGAGTGGA
ATAAGCACCTCAACTGGCAGCCCATCCCAATCGTGTCGGAACCCCTGGAT
GAGGACTCGCTCCTGCTGGTGCGCACTCCCTGTCCCCGCTACTTTGAAGC
CTTGGAAGAGGTCTTTAAGAGACCGGAAGTTATCGCTGAAACCGAGCCCT
ACGAACAAATGTTCCGCGAGCTGACAAATCTGACTGGAAAGGCGATCCAG
AGTGCCGAGGATATCAATTCCCTATACATAACCCTCCTCGCCGAACAGGA
ATTCGGCTACAAGTTGCCCGACTGGGCCAAGGACTACTTCCCCGATCGCA
TGCAGTTTCTGGCCGAGCAGAGTTACGTCTACAATGCGTACACCCCCGAG
ATGCAGAAGATCAAGGGCGGACCGTTTCTGAAGAGGATGTACAAGGAGAT
GGTCGCCAAGAGGGCGGGTAGCCTGAAGCCCAAGGATCGCGGTATGTTCA
TATACACCGGCCACGACTGGACCGTCGGCAATATCCTGATGGCCTTGGGT
GTGTGGAAGCGCCAGATGCCACGGTTCGCGGTGATGGCCATTTTCGAGAC
GCATAGGGATAAGGAAACCGGAGAGTACTATGTGGAGATCTTCCTCCGCA
ACGACGAGGACGGCTGTCTCGAGCAGCTCCAGCTGAAAGACTGCGACCGC
CGGTGTCCACTGGACCGCCTCATCAAGCTGAGTGCCGATGTGCTGCCCAC
GGAGCCGGCGGAGCAGAGATGCCGGCCACATGACTCGAACTTCGTGGAGC
CACCGCCGCGCGTAATCGATCAGAATGGCCGTGCAAGCTTTCTAGACCAT
BO19649.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-RA | 1269 | CG9452-PA | 1..1266 | 17..1282 | 6330 | 100 | Plus |
| CG9449-RH | 1215 | CG9449-PH | 748..829 | 803..884 | 260 | 87.8 | Plus |
| CG9449-RG | 1215 | CG9449-PG | 748..829 | 803..884 | 260 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-RA | 1652 | CG9452-RA | 249..1514 | 17..1282 | 6330 | 100 | Plus |
| CG9449-RH | 2589 | CG9449-RH | 1759..1840 | 803..884 | 260 | 87.8 | Plus |
| CG9449-RG | 1939 | CG9449-RG | 1326..1407 | 803..884 | 260 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19501746..19502274 | 1087..559 | 2645 | 100 | Minus |
| 3L | 28110227 | 3L | 19503323..19503622 | 316..17 | 1500 | 100 | Minus |
| 3L | 28110227 | 3L | 19501148..19501344 | 1282..1086 | 985 | 100 | Minus |
| 3L | 28110227 | 3L | 19502326..19502484 | 559..401 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 19502542..19502625 | 400..317 | 420 | 100 | Minus |
| 3L | 28110227 | 3L | 19492802..19492883 | 884..803 | 260 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:35:38 has no hits.
BO19649.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-19 09:48:55 Download gff for
BO19649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 240..1505 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:33:22 Download gff for
BO19649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 249..1514 | 17..1284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:22 Download gff for
BO19649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 249..1514 | 17..1284 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:22 Download gff for
BO19649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19501144..19501342 | 1088..1284 | 98 | <- | Minus |
| 3L | 19501746..19502273 | 560..1087 | 100 | <- | Minus |
| 3L | 19502326..19502484 | 401..559 | 100 | <- | Minus |
| 3L | 19502542..19502625 | 317..400 | 100 | <- | Minus |
| 3L | 19503323..19503622 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:33:22 Download gff for
BO19649.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19494244..19494442 | 1088..1284 | 98 | <- | Minus |
| arm_3L | 19494846..19495373 | 560..1087 | 100 | <- | Minus |
| arm_3L | 19495426..19495584 | 401..559 | 100 | <- | Minus |
| arm_3L | 19495642..19495725 | 317..400 | 100 | <- | Minus |
| arm_3L | 19496423..19496722 | 17..316 | 100 | | Minus |
BO19649.pep Sequence
Translation from 16 to 1300
> BO19649.pep
MIFARWTRKQMLTMFGLGAGLLGLVIVIGVLNSGVSSKDLDWKEASRSKC
FKTRPNTTHSTLELVHIVFRHGIRTPVDTYPKDPYLNDGFKPTGWGHVTN
SGKRELFEMGRWLNRRYGEFMGPYYRPDRLHAQATASPRAMMSLQTTLAS
MFEPRGTPMEWNKHLNWQPIPIVSEPLDEDSLLLVRTPCPRYFEALEEVF
KRPEVIAETEPYEQMFRELTNLTGKAIQSAEDINSLYITLLAEQEFGYKL
PDWAKDYFPDRMQFLAEQSYVYNAYTPEMQKIKGGPFLKRMYKEMVAKRA
GSLKPKDRGMFIYTGHDWTVGNILMALGVWKRQMPRFAVMAIFETHRDKE
TGEYYVEIFLRNDEDGCLEQLQLKDCDRRCPLDRLIKLSADVLPTEPAEQ
RCRPHDSNFVEPPPRVIDQNGRASFLDH
BO19649.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-PA | 422 | CG9452-PA | 1..422 | 1..422 | 2273 | 100 | Plus |
| CG9449-PH | 404 | CG9449-PH | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PG | 404 | CG9449-PG | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PF | 404 | CG9449-PF | 4..402 | 4..415 | 1227 | 54.5 | Plus |
| CG9449-PK | 391 | CG9449-PK | 29..389 | 55..415 | 1222 | 58.7 | Plus |
