BO19656.complete Sequence
853 bp assembled on 2009-05-13
GenBank Submission: KX798895
> BO19656.complete
GAAGTTATCAGTCGACATGCTCCGAACCCGACTCATCCAGGCGGCCAGCT
CCGCCCAGCGAGCGTTCTCCACCAGCCAGAAGGCCCTGGCGGCCAAGCAG
ATGACCGTGCGAGATGCCCTCAACAGCGCATTGGACGATGAGCTGGCCCG
CGACGACCGCGTCTTCATCCTGGGCGAGGAGGTGGCCCAGTACGACGGTG
CTTACAAGGTTTCCCGTGGACTGTGGAAGAAGTACGGCGACAAGCGCGTC
ATCGACACGCCAATCACAGAGATGGGCTTTGCCGGCATCGCTGTTGGCGC
TGCCATGGCCGGTCTGCGTCCCGTGTGCGAGTTCATGACCTGGAACTTCT
CCATGCAGGCCATCGATCACGCAAAGATACTCGATTGCGCCAAGCCGCCA
GTCGGTGATCGCCCTCTGCCAATAAGCCTCATAATTGAAAGTCCACGCTC
AACTTGGCTGAATGAGATCAACGACATCCTGCACAGAGATCGAGTCGGCG
AGGTGATTGCGCCGCCGCTGGACAAGAGCAAGTCGGACAAGATGGAGGCG
GCCCGCCTCATCGTCATTCGGCGGCGCAAGATGAAGAAGCACAAGCTAAA
GAAGCTGCGTCGCAAGATGAAGTTCGAGTGGGCCAAGGTGCGCCAGCGCC
GCGAGATGCGCAAAGAGAAGGCCTTCCAAGCAAAGCTGATATCCCAGATC
AAGCAGGCGGAGGCATTCAGTGCGGAGCAGCACGTGGCGGAGATCCTGCG
GCAGGCCAACGAGACGCCGCTGCCGCGTTTCTGGAAGGGACGCCGCCTGC
CGGCATTTATCATTAAGCAGAAACTAGGCATTAAGGCAAGCTTTCTAGAC
CAT
BO19656.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RB | 822 | CG11876-PB | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG11876-RC | 822 | CG11876-PC | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG11876-RD | 1098 | CG11876-PD | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-RB | 1025 | CG11876-RB | 154..972 | 17..835 | 4095 | 100 | Plus |
| CG11876-RC | 991 | CG11876-RC | 120..938 | 17..835 | 4095 | 100 | Plus |
| CG11876-RD | 1386 | CG11876-RD | 51..404 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29114429..29114893 | 371..835 | 2325 | 100 | Plus |
| 3R | 32079331 | 3R | 29113258..29113451 | 17..210 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 29113992..29114156 | 207..371 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:41:54 has no hits.
BO19656.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:01 Download gff for
BO19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RB | 154..972 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:47 Download gff for
BO19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 120..938 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:51 Download gff for
BO19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11876-RC | 120..938 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:51 Download gff for
BO19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29113258..29113449 | 17..208 | 100 | -> | Plus |
| 3R | 29113994..29114155 | 209..370 | 100 | -> | Plus |
| 3R | 29114429..29114893 | 371..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:47 Download gff for
BO19656.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24938980..24939171 | 17..208 | 100 | -> | Plus |
| arm_3R | 24939716..24939877 | 209..370 | 100 | -> | Plus |
| arm_3R | 24940151..24940615 | 371..837 | 99 | | Plus |
BO19656.pep Sequence
Translation from 16 to 853
> BO19656.pep
MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVF
ILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGL
RPVCEFMTWNFSMQAIDHAKILDCAKPPVGDRPLPISLIIESPRSTWLNE
INDILHRDRVGEVIAPPLDKSKSDKMEAARLIVIRRRKMKKHKLKKLRRK
MKFEWAKVRQRREMRKEKAFQAKLISQIKQAEAFSAEQHVAEILRQANET
PLPRFWKGRRLPAFIIKQKLGIKASFLDH
BO19656.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11876-PB | 273 | CG11876-PB | 1..273 | 1..273 | 1384 | 100 | Plus |
| CG11876-PC | 273 | CG11876-PC | 1..273 | 1..273 | 1384 | 100 | Plus |
| CG11876-PD | 365 | CG11876-PD | 1..118 | 1..118 | 596 | 100 | Plus |
| CG11876-PA | 365 | CG11876-PA | 1..118 | 1..118 | 596 | 100 | Plus |
