BO19658.complete Sequence
2143 bp assembled on 2010-10-20
GenBank Submission: KX798100
> BO19658.complete
GAAGTTATCAGTCGACATGCCGGCGGAAATTAAACCATCCGCGCCCGCTG
AGCCGGAAACGCCGACCAAGAGCAAACCCAAGTCCAGCTCATCCTCGCAC
GGAAAGCCTGCCCTAGCACGAGTCACCCTGCTGGATGGCTCCCTTCTGGA
CGTGTCCATTGATCGCAAAGCCATTGGCCGTGATGTGATCAACTCAATCT
GCGCCGGTCTGAACCTCATCGAAAAGGACTACTTTGGTCTGACCTATGAG
ACGCCCACAGATCCGCGCACTTGGCTGGATCTGGAGAAGCCGGTATCCAA
GTTCTTCCGCACGGACACTTGGCCTCTCACCTTCGCCGTCAAGTTCTATC
CGCCGGAGCCATCGCAGCTGAAGGAGGACATCACGCGCTACCATTTGTGC
CTGCAGGTGCGCAATGACATCCTGGAGGGTCGACTGCCCTGCACATTCGT
CACCCACGCTCTGCTCGGATCCTACTTGGTGCAGTCGGAGATGGGCGACT
ACGATGCAGAGGAAATGCCCACCAGGGCCTACCTGAAGGACTTCAAGATC
GCTCCAAATCAGACGGCTGAGTTGGAGGATAAGGTCATGGATCTTCACAA
GACCCACAAGGGACAATCGCCCGCCGAGGCTGAGCTACACTACCTGGAGA
ATGCCAAGAAGCTGGCCATGTACGGCGTGGACTTGCATCCCGCTAAGGAT
TCTGAGGGCGTGGACATCATGCTGGGCGTTTGTGCCTCCGGTTTGCTCGT
CTACCGCGATAAATTGCGCATCAACCGCTTTGCCTGGCCCAAGATTCTGA
AGATCTCCTACAAGCGCCACCATTTCTACATCAAGATCCGACCGGGTGAA
TTCGAGCAGTACGAATCCACCATTGGCTTTAAGCTGGCCAACCATCGTGC
CGCCAAGAAACTGTGGAAATCCTGCGTGGAGCACCACACCTTCTTCCGCC
TGATGACCCCCGAACCGGTCAGCAAGTCCAAGATGTTCCCAGTCTTCGGG
TCCACCTATCGCTACAAGGGTCGCACTCAGGCCGAGAGCACGAACACACC
CGTGGATCGTACTCCTCCGAAGTTCAATAGGACTCTGTCCGGAGCTCGTC
TCACTTCCAGGAGCATGGATGCTCTGGCCTTGGCCGAAAAGGAAAAGGTG
GCTAGGAAGAGCAGCACCCTGGATCATCGGGGAGATCGCAATGCCGATGG
CGATGCCCACAGCCGCAGTCCCATCAAGAACAAGAAGGAGAAGTTGATGC
GACAGTCGAGCACCGGCACGGCTTCGGCCTCCTCGCAAAGTTCCCTCGAG
GGTGACTACGAGACCAACCTAGAGATTGAGGCCATCGAGGCTGAGCCCCC
CGTTCAGGATGCTGATAAGGAGGCTAAGTTGCGTGAGAAGAAACAAAAGG
AGAAGGAGGAGAAGGAGCGAAAGGAGCGGGAGAAGCGGGAGTTGGAGGAG
AAGAAGAAGGCCGAAAAGGCTGCCAAGGCAGCACTTGCCGCTGGTGCCGC
TGCAGGAGCGGCTGTTAATGGCAATGACGAGCTGAATGATTCCAACAAGT
CTGACAAGTCCTCAGGCAGACGTGCTGATGCTACACCCACCGACCTGAGT
GGCGCCTATGTCACGGCCACCGCAGTCACCACCCGCACCGCCACCACGCA
CGAGGATCTGGGCAAGAACGCCAAGACGGAGCAGCTGGAGGAGAAGACGG
TGGCCACCACCCGCACCCACGATCCCAACAAGCAGCAGCAGCGCGTCGTT
ACCCAGGAGGTGAAGACGACGGCGACGGTCACCAGTGGGGATCAGAAATC
TCCGCTGTTTACGACCTCCGCCACCACTGGACCCCATGTGGAAAGCACCC
GAGTGGTTCTCGGTGAGGACACACCCGGATTCTCCGGACATGGCGAAATC
ATCTCCACCCAAACCGTGAGCAGCAAAACCCGCACTGTGGAAACCATTAC
CTACAAAACCGAACGCGATGGCATTGTGGAGACCCGAGTGGAACAGAAGA
TAACCATTCAGTCCGATGGAGATCCGATCGATCATGACAAAGCCTTGGCC
GAGGCAATACAAGAAGCGACGGCCATGAATCCGGACATGACAGTCGAGAA
GATTGAAATTCAGCAGCAAACGCAGGCAAGCTTTCTAGACCAT
BO19658.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RC | 2112 | CG11949-PC | 1..2109 | 17..2125 | 10545 | 100 | Plus |
| cora-RB | 2670 | CG11949-PB | 1..1546 | 17..1574 | 7575 | 99.2 | Plus |
| cora-RG | 5091 | CG11949-PG | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| cora-RB | 2670 | CG11949-PB | 2116..2667 | 1574..2125 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RC | 2914 | CG11949-RC | 372..2480 | 17..2125 | 10545 | 100 | Plus |
| cora-RB | 3472 | CG11949-RB | 372..1917 | 17..1574 | 7575 | 99.2 | Plus |
| cora-RG | 5893 | CG11949-RG | 372..1598 | 17..1243 | 6135 | 100 | Plus |
| cora-RB | 3472 | CG11949-RB | 2487..3038 | 1574..2125 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19235763..19236209 | 164..610 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 19236485..19236843 | 763..1121 | 1795 | 100 | Plus |
| 2R | 25286936 | 2R | 19242174..19242395 | 1574..1795 | 1110 | 100 | Plus |
| 2R | 25286936 | 2R | 19238148..19238315 | 1354..1521 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 19242701..19242859 | 1793..1951 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 19236267..19236419 | 610..762 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 19235516..19235662 | 17..163 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 19236941..19237063 | 1121..1243 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 19237326..19237442 | 1242..1358 | 585 | 100 | Plus |
| 2R | 25286936 | 2R | 19243069..19243180 | 1952..2063 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 19243250..19243317 | 2058..2125 | 325 | 98.5 | Plus |
| 2R | 25286936 | 2R | 19238381..19238435 | 1520..1574 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:08:53 has no hits.
BO19658.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:41 Download gff for
BO19658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RC | 370..2478 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:27 Download gff for
BO19658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RC | 372..2480 | 17..2127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:21 Download gff for
BO19658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RC | 372..2480 | 17..2127 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:21 Download gff for
BO19658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19243069..19243179 | 1952..2062 | 100 | -> | Plus |
| 2R | 19243255..19243317 | 2063..2127 | 96 | | Plus |
| 2R | 19236942..19237063 | 1122..1243 | 100 | -> | Plus |
| 2R | 19237328..19237441 | 1244..1357 | 100 | -> | Plus |
| 2R | 19238152..19238314 | 1358..1520 | 100 | -> | Plus |
| 2R | 19238382..19238434 | 1521..1573 | 100 | -> | Plus |
| 2R | 19242174..19242395 | 1574..1795 | 100 | -> | Plus |
| 2R | 19242704..19242859 | 1796..1951 | 100 | -> | Plus |
| 2R | 19235516..19235662 | 17..163 | 100 | -> | Plus |
| 2R | 19235763..19236208 | 164..609 | 100 | -> | Plus |
| 2R | 19236267..19236419 | 610..762 | 100 | -> | Plus |
| 2R | 19236485..19236843 | 763..1121 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:27 Download gff for
BO19658.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15130209..15130364 | 1796..1951 | 100 | -> | Plus |
| arm_2R | 15130574..15130684 | 1952..2062 | 100 | -> | Plus |
| arm_2R | 15130760..15130822 | 2063..2127 | 96 | | Plus |
| arm_2R | 15123021..15123167 | 17..163 | 100 | -> | Plus |
| arm_2R | 15123268..15123713 | 164..609 | 100 | -> | Plus |
| arm_2R | 15123772..15123924 | 610..762 | 100 | -> | Plus |
| arm_2R | 15123990..15124348 | 763..1121 | 100 | -> | Plus |
| arm_2R | 15124447..15124568 | 1122..1243 | 100 | -> | Plus |
| arm_2R | 15124833..15124946 | 1244..1357 | 100 | -> | Plus |
| arm_2R | 15125657..15125819 | 1358..1520 | 100 | -> | Plus |
| arm_2R | 15125887..15125939 | 1521..1573 | 100 | -> | Plus |
| arm_2R | 15129679..15129900 | 1574..1795 | 100 | -> | Plus |
BO19658.pep Sequence
Translation from 16 to 2143
> BO19658.pep
MPAEIKPSAPAEPETPTKSKPKSSSSSHGKPALARVTLLDGSLLDVSIDR
KAIGRDVINSICAGLNLIEKDYFGLTYETPTDPRTWLDLEKPVSKFFRTD
TWPLTFAVKFYPPEPSQLKEDITRYHLCLQVRNDILEGRLPCTFVTHALL
GSYLVQSEMGDYDAEEMPTRAYLKDFKIAPNQTAELEDKVMDLHKTHKGQ
SPAEAELHYLENAKKLAMYGVDLHPAKDSEGVDIMLGVCASGLLVYRDKL
RINRFAWPKILKISYKRHHFYIKIRPGEFEQYESTIGFKLANHRAAKKLW
KSCVEHHTFFRLMTPEPVSKSKMFPVFGSTYRYKGRTQAESTNTPVDRTP
PKFNRTLSGARLTSRSMDALALAEKEKVARKSSTLDHRGDRNADGDAHSR
SPIKNKKEKLMRQSSTGTASASSQSSLEGDYETNLEIEAIEAEPPVQDAD
KEAKLREKKQKEKEEKERKEREKRELEEKKKAEKAAKAALAAGAAAGAAV
NGNDELNDSNKSDKSSGRRADATPTDLSGAYVTATAVTTRTATTHEDLGK
NAKTEQLEEKTVATTRTHDPNKQQQRVVTQEVKTTATVTSGDQKSPLFTT
SATTGPHVESTRVVLGEDTPGFSGHGEIISTQTVSSKTRTVETITYKTER
DGIVETRVEQKITIQSDGDPIDHDKALAEAIQEATAMNPDMTVEKIEIQQ
QTQASFLDH
BO19658.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-PC | 703 | CG11949-PC | 1..703 | 1..703 | 3610 | 100 | Plus |
| cora-PE | 699 | CG11949-PE | 1..699 | 1..703 | 3333 | 90.2 | Plus |
| cora-PB | 889 | CG11949-PB | 1..603 | 1..589 | 2680 | 87.8 | Plus |
| cora-PF | 1600 | CG11949-PF | 1..491 | 1..519 | 2460 | 93.1 | Plus |
| cora-PG | 1696 | CG11949-PG | 1..481 | 1..519 | 2454 | 92.7 | Plus |
| cora-PB | 889 | CG11949-PB | 705..889 | 519..703 | 926 | 99.5 | Plus |
| cora-PF | 1600 | CG11949-PF | 1467..1600 | 567..703 | 564 | 84.7 | Plus |
