BO19660.complete Sequence
1045 bp assembled on 2009-05-13
GenBank Submission: KX794984
> BO19660.complete
GAAGTTATCAGTCGACATGGGAAAAGGCGTTAACACAGTCTTTAGGCCAG
CAGAATGGGACAATTCGGAGGAGAAGGAAAGACCCAAGTTGGAGTACTTG
GTGACCAACAAGAAGACTCCGCCGGTTGAACTCTACCTCACGGCATTCGC
CTCCGCCTGCAGTGCCGAGATTGTGGGCTATCCCTTCGATATGTGCAAGA
CCCGAATGCAGATCCAGGGCGAGATCGCGAGCAGGGTGGGTCAGAAGGCC
AAGTACCGAGGTCTGCTGGCCACTGCCATGGGCATCGTCAGGGAGGAGGG
TCTGCTGAAGCTCTACGGTGGCATATCCGCCATGCTGTTCCGCCACTCGC
TCTTCAGTGGCATCAAAATGCTGACCTACGACTATATGCGTGAGAAGATG
ATCGTGCCCGACGAGGACGGCAGGCCGCAGCTATCCTTCCTGGGATCCTG
CATCAGTGGCGTCTTAGCCGGCGCAACTGCCAGCGTACTAACGAATCCCA
CCGAGCTGATTAAGATCCAAATGCAAATGGAGGGACAGCGGCGTCTAAGG
GGCGAGCCTCCACGCATTCACAATGTGCTCCAGGCCCTGACTTCCATTTA
CAGAACGGGTGGTGTGGTGGGTCTCTGGAAGGGAACTGTTCCAAACACAT
GGCGCTCGGCACTCGTGACCATAGGGGACGTCAGCTGCTATGACTTTTGC
AAACGCTTTCTGATTGCCGAGTTCGATCTGGTGGATAACCGAGAAGTGCA
GTTCGTAGCCGCCATGACCGCCGGCGTAGCGGATGCCATTCTGAGCTTGC
CAGCGGACGTGGTCAAGTCCCGGATCATGAATCAGCCAACCGATGAGCAG
GGACGCGGCATTCATTACAAGGGCTCCCTGGATTGCTTAAGTAGGTTGGT
TAGAGAGGAGGGCTTTTTGGCCATGTACAAGGGATTCATTCCATATTGGA
TGCGTGTCGGACCTGCCTCCGTGGTGTTCTGGATGACCTTCGAGCAGATT
AGACGGTTTCGTGGCAGCGAAGGTTACGCAAGCTTTCTAGACCAT
BO19660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1014 | CG18340-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| Ucp4B-RC | 687 | CG18340-PC | 1..687 | 17..713 | 3300 | 98.6 | Plus |
| Ucp4B-RB | 669 | CG18340-PB | 1..659 | 17..675 | 3295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-RA | 1098 | CG18340-RA | 44..1054 | 17..1027 | 5055 | 100 | Plus |
| Ucp4B-RC | 1088 | CG18340-RC | 44..1044 | 17..1027 | 4870 | 99 | Plus |
| Ucp4B-RB | 793 | CG18340-RB | 44..702 | 17..675 | 3295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5969902..5970560 | 17..675 | 3295 | 100 | Plus |
| 2L | 23513712 | 2L | 5970627..5970981 | 673..1027 | 1775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:37:49 has no hits.
BO19660.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:03 Download gff for
BO19660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 20..1030 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:26 Download gff for
BO19660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1054 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:10 Download gff for
BO19660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4B-RA | 44..1054 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:10 Download gff for
BO19660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5969902..5970559 | 17..674 | 100 | -> | Plus |
| 2L | 5970629..5970981 | 675..1029 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:26 Download gff for
BO19660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5969902..5970559 | 17..674 | 100 | -> | Plus |
| arm_2L | 5970629..5970981 | 675..1029 | 99 | | Plus |
BO19660.pep Sequence
Translation from 16 to 1045
> BO19660.pep
MGKGVNTVFRPAEWDNSEEKERPKLEYLVTNKKTPPVELYLTAFASACSA
EIVGYPFDMCKTRMQIQGEIASRVGQKAKYRGLLATAMGIVREEGLLKLY
GGISAMLFRHSLFSGIKMLTYDYMREKMIVPDEDGRPQLSFLGSCISGVL
AGATASVLTNPTELIKIQMQMEGQRRLRGEPPRIHNVLQALTSIYRTGGV
VGLWKGTVPNTWRSALVTIGDVSCYDFCKRFLIAEFDLVDNREVQFVAAM
TAGVADAILSLPADVVKSRIMNQPTDEQGRGIHYKGSLDCLSRLVREEGF
LAMYKGFIPYWMRVGPASVVFWMTFEQIRRFRGSEGYASFLDH
BO19660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4B-PA | 337 | CG18340-PA | 1..337 | 1..337 | 1752 | 100 | Plus |
| Ucp4B-PB | 222 | CG18340-PB | 1..221 | 1..221 | 1137 | 99.5 | Plus |
| Ucp4B-PC | 228 | CG18340-PC | 1..219 | 1..219 | 1129 | 100 | Plus |
| Ucp4A-PB | 340 | CG6492-PB | 44..340 | 40..337 | 772 | 48 | Plus |
| Ucp4A-PA | 340 | CG6492-PA | 44..340 | 40..337 | 772 | 48 | Plus |
