BO19664.complete Sequence
1846 bp assembled on 2010-10-20
GenBank Submission: KX799611
> BO19664.complete
GAAGTTATCAGTCGACATGTCTACGGAGGAGCATGTGTGGCGAGCGCACG
TCGTGCGGCGCTTACGCGAGCGAAATCGCAAGGAGTGCGACAACTTCAAG
GAGATCATCGAGCAAAACAACCGACTGATTGACCATGTGGCGCAACTGAA
GGCGGACAACCTGAAGATCTCCGTCGAAAACGAGCAGCTCCGCAACGCGG
TGTCAACAGGTGGCACCGGCTCCAACGTGGCTATCGCCACCCTCGAAAAG
AAGCTGCTCAGCCAGCAGGAGGAGCTCACAGAGCTACACAAGCGCAAGGG
CGAGAACTCCCAGATGATCGTGGACCTCAACCAGAAGGTCGAGCAGCAGA
GGATCATAATTTCCGAGAAGGAGCACAGCCTCGTCGAACAGCAAACGAAC
AACAACCGATTGCGCGCGGAGGTGCAGCTACTTCACTCGAGTTTGGAGGA
ACTCAAGAAGCTGAACAACACAATGCTGGACGAACATACGGCGCTTCAAT
TGGCATTTAGCTCCCTCGAGGAGAAGTTAAGGGGAGTGCAAGATGAAAAT
CGGCGTCTACTGGAGCGACTTATGCAATACAAGTCAAAGGATGCCGACAA
GTTGAACGAGGAAAACGAGAGCATAATTAGGAAACGTTCGGCTAAACTGA
AACGTGACCTAGAAGACGCGGTTCGTGAGCCCAGTTCGTCCAGCAACGCC
GCCTCCTCGCCCGGCGCCGCATCCTTGCAGCGCAACTCCAGTCCCGCCCA
GTTCGTTGGCGGCCTCATCGGCGACGAGGATTTCGACGAGGCTGCGATAA
ATGGCGCCATGGAGGCCATAGGTCTCGATGATAATGAATATATTAGCGCT
CGTTTTACAGCAGGCGAAATCGCCGAGAACTCGCGGGCTTCCATCGACAC
CCTGAAGGCCACGGGCTACCTGGGCCAGGCCAATCCCACCAAGATCCTCA
TGAAGTTCGAGGCCCACGAGAACGAGTCGCACGCGGTGCGCTGGAGTCCC
GTGGAGCGCATGGTGGCCACCGGTGGCGCTGATCGCAAAGTCAAACTTTG
GGACATTGGCAAAAATTCCACCGAACCACGTGCCGTTCTAAGCGGGAGCA
GTGCTGGGATTAACTCCGTAGATTTCGATTCGACAGGCGCCTACATCCTG
GGCACCTCCAATGACTACGGAGCCAGAGTATGGACAGTGATGGACAATCG
CTTAAGACACACGCTGACGGGTCACAGCGGCAAGGTAATGGCCGCCAAGT
ACGTCCAGGAGCCCATCAAAGTGGTGACCGGTAGCCACGATCGCACACTG
AAGATCTGGGATTTGCGCAGCATCGCCTGCATAGAGACGAAGTTCGCCGG
CTCCAGCTGCAATGATCTAGTCACCACCGACAGCCTCGGATCAACGATCA
TCAGTGGGCACTACGATAAGAAGATCCGGTTCTGGGACATACGCACCGAG
AAGCAGGCGGACGACGTCTTAATGCCGGCCAAGATCACCTCTTTGGATTT
GTCAAAAGATTGCAATTACCTCATATGCTCTGTAAGAGACGATACTATTA
AACTGTTAGATTTACGCAAGAACCAAGTTATATCCACGTTTACAAACGAA
CACTTTAAGATCAGCTGTGATTTTGCTCGAGCTTCTTTCAACTCGAGCGG
CCTGAAGATCGCTTGTGGATCAGCGGATGGCGCTATATACATTTGGAATG
TGAATGGGTTCCTGGAAGCCACACTCAAGGGACACAGCACCGCCGTAAAC
GCGGTCAGTTGGAGTCCCAACAACAACATGCTGGCCTCCGTGGGAAAGAA
CAAGCGCTGCACCATCTACTCGGAGTCAGCAAGCTTTCTAGACCAT
BO19664.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg16-RC | 1815 | CG31033-PC | 1..1812 | 17..1828 | 9030 | 99.9 | Plus |
| Atg16-RB | 1338 | CG31033-PB | 49..1335 | 542..1828 | 6405 | 99.8 | Plus |
| Atg16-RA | 1260 | CG31033-PA | 1..1257 | 572..1828 | 6255 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg16-RC | 2350 | CG31033-RC | 255..2068 | 15..1828 | 9040 | 99.9 | Plus |
| Atg16-RB | 1668 | CG31033-RB | 100..1386 | 542..1828 | 6405 | 99.8 | Plus |
| Atg16-RA | 1659 | CG31033-RA | 91..1377 | 542..1828 | 6405 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29831915..29832350 | 1064..629 | 2165 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29828226..29828526 | 1508..1208 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 29834361..29834622 | 378..117 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 29833932..29834097 | 542..377 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 29831690..29831832 | 1207..1065 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 29827850..29827993 | 1737..1594 | 705 | 99.3 | Minus |
| 3R | 32079331 | 3R | 29834746..29834847 | 116..15 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 29827563..29827657 | 1828..1734 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 29833192..29833281 | 631..542 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 29828073..29828159 | 1593..1507 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:19:42 has no hits.
BO19664.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:23 Download gff for
BO19664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31033-RC | 257..2068 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:47 Download gff for
BO19664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 257..2068 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:11:04 Download gff for
BO19664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg16-RC | 257..2068 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:11:04 Download gff for
BO19664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29827559..29827653 | 1738..1830 | 97 | <- | Minus |
| 3R | 29827850..29827993 | 1594..1737 | 99 | <- | Minus |
| 3R | 29828073..29828157 | 1509..1593 | 100 | <- | Minus |
| 3R | 29828226..29828526 | 1208..1508 | 100 | <- | Minus |
| 3R | 29831690..29831832 | 1065..1207 | 100 | <- | Minus |
| 3R | 29831915..29832348 | 631..1064 | 99 | <- | Minus |
| 3R | 29833193..29833281 | 542..630 | 100 | <- | Minus |
| 3R | 29833933..29834095 | 379..541 | 100 | <- | Minus |
| 3R | 29834361..29834622 | 117..378 | 100 | <- | Minus |
| 3R | 29834746..29834845 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:47 Download gff for
BO19664.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25657412..25657554 | 1065..1207 | 100 | <- | Minus |
| arm_3R | 25653281..25653375 | 1738..1830 | 97 | <- | Minus |
| arm_3R | 25653572..25653715 | 1594..1737 | 99 | <- | Minus |
| arm_3R | 25653795..25653879 | 1509..1593 | 100 | <- | Minus |
| arm_3R | 25653948..25654248 | 1208..1508 | 100 | <- | Minus |
| arm_3R | 25657637..25658070 | 631..1064 | 99 | <- | Minus |
| arm_3R | 25658915..25659003 | 542..630 | 100 | <- | Minus |
| arm_3R | 25659655..25659817 | 379..541 | 100 | <- | Minus |
| arm_3R | 25660083..25660344 | 117..378 | 100 | <- | Minus |
| arm_3R | 25660468..25660567 | 17..116 | 100 | | Minus |
BO19664.pep Sequence
Translation from 16 to 1846
> BO19664.pep
MSTEEHVWRAHVVRRLRERNRKECDNFKEIIEQNNRLIDHVAQLKADNLK
ISVENEQLRNAVSTGGTGSNVAIATLEKKLLSQQEELTELHKRKGENSQM
IVDLNQKVEQQRIIISEKEHSLVEQQTNNNRLRAEVQLLHSSLEELKKLN
NTMLDEHTALQLAFSSLEEKLRGVQDENRRLLERLMQYKSKDADKLNEEN
ESIIRKRSAKLKRDLEDAVREPSSSSNAASSPGAASLQRNSSPAQFVGGL
IGDEDFDEAAINGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATG
YLGQANPTKILMKFEAHENESHAVRWSPVERMVATGGADRKVKLWDIGKN
STEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWTVMDNRLRHTL
TGHSGKVMAAKYVQEPIKVVTGSHDRTLKIWDLRSIACIETKFAGSSCND
LVTTDSLGSTIISGHYDKKIRFWDIRTEKQADDVLMPAKITSLDLSKDCN
YLICSVRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNSSGLKIAC
GSADGAIYIWNVNGFLEATLKGHSTAVNAVSWSPNNNMLASVGKNKRCTI
YSESASFLDH
BO19664.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg16-PC | 604 | CG31033-PC | 1..604 | 1..604 | 3073 | 100 | Plus |
| Atg16-PF | 612 | CG31033-PF | 1..612 | 1..604 | 3054 | 98.7 | Plus |
| Atg16-PB | 445 | CG31033-PB | 16..445 | 175..604 | 2210 | 100 | Plus |
| Atg16-PA | 419 | CG31033-PA | 1..419 | 186..604 | 2156 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 71..354 | 317..600 | 323 | 29.4 | Plus |
