BO19665.complete Sequence
1099 bp assembled on 2009-05-13
GenBank Submission: KX796192
> BO19665.complete
GAAGTTATCAGTCGACATGACGGCCAAGATGAAGCTGCGGTCCCAGCTGC
ATCTGCTCACTGGTTTCATGGCTGGATTCGTGCTGGCCTTCGTGCTCCTC
CTCTACGTCTACGATGTCAGCAGGGTGACGCCCTGCTGGAGCAGCACCTC
CACCATGACCACGGCCACAACGGCCAGGATTGAGGATGGTCCACCACCGC
GCATTCTGTGCATGGTGCTCACCTGTCCGGAGAACGTGCAGAGCCTGGCC
AGAAGTGTCTACGAGACCTGGGGCCAGCGCTGCAGCCGCCTGATCTTCGC
CAGCAGCGAGGACTACGAGCCACTGGGCGTGGTCGGTGTGGTGGAGCCAA
CTGGCGGTGGCTACGAGGATCTGTGGAATAAAACGCGCGAGGGATTCCGA
CACGTTTGGGAGCACTACGCTGGCGACTACGATTGGTTCCTCAAGGCAGA
TGACGATACGTACGTGGTCATGGAGAATCTGCAGCACCTGCTCCGTGGCT
TCGATCCGAATACGCCCGTCTTCTTTGGCTACAAGATGTCGCGATACAAT
GTGAGTTATATGTCTGGCGGAGCTTCGTATATTCTGAGTCGTGAGGCCCT
ACATCGATTTGCAACACAAGCCTATGAATCTGAGGTGATTTGTCCGCAGC
CAAAAAAGATGGGCATCGAGGACTTTTACATGGGAATTTGTATGCAGAAT
GTGGGCGTCCACTTTGTCGACTCCACACACGCTTTGGATGGAGACACGAA
GCCGAAGTTTATGCCCCTGGATCTGGAGAACTATATGTCGGATGCGAATT
ACACAATTCCGGAGTGGCTGCGCCTCATGAGTCTATCTCGAGTTGAAACG
GGCTTGGCCTGCTGTTCCAACTACTCTGTGGCCTTTCATTATGCCAGTCG
AGAACGGATGTTCCTCTACGAGTTTCTAATCTATCATCTGAAAGTATTTG
ATCCTAACCAGATTTCAGAACGCGGACACAGAAGTCGATTAACTTTATCT
GATTTAACGAGAAGATTTCCACTGGAAGATAACTCCAATATAAAAGACTT
GCTGCAAATGTCCGAGAAACCTGATAATTTTGCAAGCTTTCTAGACCAT
BO19665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RA | 1068 | CG3119-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| CG3119-RB | 555 | CG3119-PB | 1..537 | 17..553 | 2685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-RA | 1193 | CG3119-RA | 46..1110 | 17..1081 | 5325 | 100 | Plus |
| CG3119-RB | 682 | CG3119-RB | 46..582 | 17..553 | 2685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:21:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2837344..2837788 | 461..17 | 2225 | 100 | Minus |
| 2L | 23513712 | 2L | 2835254..2835552 | 851..553 | 1495 | 100 | Minus |
| 2L | 23513712 | 2L | 2834970..2835201 | 1081..850 | 1160 | 100 | Minus |
| 2L | 23513712 | 2L | 2837193..2837286 | 553..460 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:21:58 has no hits.
BO19665.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:54 Download gff for
BO19665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 44..1108 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:50 Download gff for
BO19665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 46..1110 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:10 Download gff for
BO19665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3119-RA | 46..1110 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:10 Download gff for
BO19665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2834968..2835200 | 851..1083 | 99 | <- | Minus |
| 2L | 2835255..2835551 | 554..850 | 100 | <- | Minus |
| 2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
| 2L | 2837346..2837788 | 17..459 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:50 Download gff for
BO19665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2834968..2835200 | 851..1083 | 99 | <- | Minus |
| arm_2L | 2835255..2835551 | 554..850 | 100 | <- | Minus |
| arm_2L | 2837193..2837286 | 460..553 | 100 | <- | Minus |
| arm_2L | 2837346..2837788 | 17..459 | 100 | | Minus |
BO19665.pep Sequence
Translation from 16 to 1099
> BO19665.pep
MTAKMKLRSQLHLLTGFMAGFVLAFVLLLYVYDVSRVTPCWSSTSTMTTA
TTARIEDGPPPRILCMVLTCPENVQSLARSVYETWGQRCSRLIFASSEDY
EPLGVVGVVEPTGGGYEDLWNKTREGFRHVWEHYAGDYDWFLKADDDTYV
VMENLQHLLRGFDPNTPVFFGYKMSRYNVSYMSGGASYILSREALHRFAT
QAYESEVICPQPKKMGIEDFYMGICMQNVGVHFVDSTHALDGDTKPKFMP
LDLENYMSDANYTIPEWLRLMSLSRVETGLACCSNYSVAFHYASRERMFL
YEFLIYHLKVFDPNQISERGHRSRLTLSDLTRRFPLEDNSNIKDLLQMSE
KPDNFASFLDH
BO19665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3119-PA | 355 | CG3119-PA | 1..355 | 1..355 | 1904 | 100 | Plus |
| CG3119-PB | 184 | CG3119-PB | 1..179 | 1..179 | 970 | 100 | Plus |
| C1GalTA-PA | 388 | CG9520-PA | 100..344 | 62..311 | 529 | 40.6 | Plus |
| C1GalTA-PC | 388 | CG9520-PC | 100..344 | 62..311 | 529 | 40.6 | Plus |
| C1GalTA-PB | 388 | CG9520-PB | 100..344 | 62..311 | 529 | 40.6 | Plus |
