Clone BO19666 Report

Search the DGRC for BO19666

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG32192-RB
Protein status:BO19666.pep: Imported from assembly
Sequenced Size:442

Clone Sequence Records

BO19666.complete Sequence

442 bp assembled on 2009-05-13

GenBank Submission: KX799349

> BO19666.complete
GAAGTTATCAGTCGACATGTGTTGTAAGTCGTGCGAAGAACAACCAGCAT
CATGCTGCTCGACTTTCTATGCATTTTTCTGCATGGGAGCAGGATTCTTT
ATGTTTAGCTTCTCGCTGCACAATGTAATTATATCAGAAGAGTCTATTAC
CATTATGGATTGGTTTCTGCACATACATGGCACTGATTTGACGGAAAAAC
AGCTTTTGATATTGTACGCTTCGGATTTAATTTTTGCCTTTACGTATGTC
CTCGCAGGAGTTTTGCTAGCTTGGGGAATCAAAAGCAAAACAAAGGGATT
TATTAAAGCTGGAAAGATCTTAAGCTATTTCTTTCCCATATATAATATTG
TTTATGTATTTCCATTAGTTATACATATTGGCTGTGTGATAAAATTATGC
AGATATCTAAAGGAAAACTTTGATGCAAGCTTTCTAGACCAT

BO19666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32192-RB 411 CG32192-PB 1..408 17..424 2040 100 Plus
CG32192-RC 402 CG32192-PC 1..399 17..424 1870 97.8 Plus
CG42393-RA 408 CG42393-PA 289..402 308..421 225 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG32192-RB 992 CG32192-RB 104..511 17..424 2040 100 Plus
CG32192-RC 983 CG32192-RC 104..502 17..424 1870 97.8 Plus
CG42393-RA 1142 CG42393-RA 400..513 308..421 225 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18040420..18040689 17..286 1350 100 Plus
3L 28110227 3L 18040763..18040844 287..368 410 100 Plus
3L 28110227 3L 18040925..18040983 366..424 295 100 Plus
3L 28110227 3L 18043207..18043266 308..367 195 88.3 Plus
Blast to na_te.dros performed 2014-11-27 15:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 7419..7474 354..300 106 67.9 Minus
blood 7410 blood BLOOD 7410bp 1858..1908 388..337 104 69.2 Minus

BO19666.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:53 Download gff for BO19666.complete
Subject Subject Range Query Range Percent Splice Strand
CG32192-RB 104..511 17..426 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:01 Download gff for BO19666.complete
Subject Subject Range Query Range Percent Splice Strand
CG32192-RB 104..511 17..426 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:13 Download gff for BO19666.complete
Subject Subject Range Query Range Percent Splice Strand
CG32192-RB 104..511 17..426 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:13 Download gff for BO19666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18040420..18040689 17..286 100 -> Plus
3L 18040763..18040844 287..368 100 -> Plus
3L 18040928..18040983 369..426 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:01 Download gff for BO19666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18033520..18033789 17..286 100 -> Plus
arm_3L 18033863..18033944 287..368 100 -> Plus
arm_3L 18034028..18034083 369..426 96   Plus

BO19666.pep Sequence

Translation from 16 to 442

> BO19666.pep
MCCKSCEEQPASCCSTFYAFFCMGAGFFMFSFSLHNVIISEESITIMDWF
LHIHGTDLTEKQLLILYASDLIFAFTYVLAGVLLAWGIKSKTKGFIKAGK
ILSYFFPIYNIVYVFPLVIHIGCVIKLCRYLKENFDASFLDH

BO19666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32192-PB 136 CG32192-PB 1..136 1..136 732 100 Plus
CG32192-PC 133 CG32192-PC 1..133 1..136 703 97.8 Plus
CG42393-PA 135 CG42393-PA 2..135 3..136 472 61.2 Plus