BO19671.complete Sequence
832 bp assembled on 2009-05-13
GenBank Submission: KX799107
> BO19671.complete
GAAGTTATCAGTCGACATGGCGGATCCAGAGCGACAAAGCCTGATCAACA
AGGACGACGGCAATGGCTACAATTCCGTGGACGCCGTGGACGAGGGTGCC
GATAATCCCGGCAGCAACTCATCGGTGGCCACAAACGAGGACGGCAATGG
AGCACCGACCGCAGTGCCTTGCATTGGACCCGATGAGCTGCCGCCGCCGT
ATCAGCAGAGTACCAACACCGGAGGCGTCCCGATGGTCACCTGTCGGGTA
TGTCAACACATGATTGACATCACCACGAAGCGGGAGCAGCACGTGGTCAA
GTGCACCCACTGCAATGAGGCTACTCCCATTCGGAACGCTCCAGCGGGCA
AGAAGTATGTTCGCTGCCCATGCAACTGTTTGTTAATCTGCAAGAGCTCG
TCGCAGCGAATCGCTTGTCCAAGGCCCAATTGCAAGAGGATCATCAACCT
GGCCCCAAGTCCCGTCACCCCGCCCGTGCCAACCATGCCGGGCATGTGCC
GCGTCACTTGTGGCCACTGTTCGGACACGTTTTTGTTCAACACGTATCAC
AACGCCTTGGCCCGGTGTCCACACTGCAGGAAGGTCTCATCGGTGGGCTC
GCGCTTTGCCAACAGCCGCGCCGTGATGTTCGCCATCGTGGCGCTGGTGT
TCCTCATCACAGGCATCGCTGTAACTATCGGCACATACTCGATTGCTTCG
GATCATGGTGGCATGTACTTCCTCTACGTGGCGCTGTTCGTGATTTCGGG
TTGCATGCTGGCCAGGTCCGCCTACTATTTCCGCCTTAAAGTGAGCGCCA
TCGATGGGCCAATGGCAAGCTTTCTAGACCAT
BO19671.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6707-RC | 801 | CG6707-PC | 1..798 | 17..814 | 3990 | 100 | Plus |
CG6707-RA | 801 | CG6707-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG6707-RB | 696 | CG6707-PB | 22..693 | 143..814 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6707-RC | 2135 | CG6707-RC | 382..1186 | 17..821 | 3995 | 99.8 | Plus |
CG6707-RA | 1954 | CG6707-RA | 201..1005 | 17..821 | 3995 | 99.8 | Plus |
CG6707-RB | 1666 | CG6707-RB | 39..717 | 143..821 | 3365 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9896179..9896388 | 535..326 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 9896454..9896636 | 325..143 | 915 | 100 | Minus |
3L | 28110227 | 3L | 9895957..9896123 | 701..535 | 835 | 100 | Minus |
3L | 28110227 | 3L | 9897928..9898055 | 144..17 | 640 | 100 | Minus |
3L | 28110227 | 3L | 9895756..9895877 | 821..700 | 580 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:26 has no hits.
BO19671.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:57 Download gff for
BO19671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6707-RC | 382..1179 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:51 Download gff for
BO19671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6707-RA | 201..998 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:07 Download gff for
BO19671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6707-RA | 201..998 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:07 Download gff for
BO19671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9895761..9895876 | 701..816 | 98 | <- | Minus |
3L | 9895958..9896122 | 536..700 | 100 | <- | Minus |
3L | 9896179..9896388 | 326..535 | 100 | <- | Minus |
3L | 9896454..9896635 | 144..325 | 100 | <- | Minus |
3L | 9897929..9898055 | 17..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:51 Download gff for
BO19671.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9891029..9891155 | 17..143 | 100 | | Minus |
arm_3L | 9888861..9888976 | 701..816 | 98 | <- | Minus |
arm_3L | 9889058..9889222 | 536..700 | 100 | <- | Minus |
arm_3L | 9889279..9889488 | 326..535 | 100 | <- | Minus |
arm_3L | 9889554..9889735 | 144..325 | 100 | <- | Minus |
BO19671.pep Sequence
Translation from 16 to 832
> BO19671.pep
MADPERQSLINKDDGNGYNSVDAVDEGADNPGSNSSVATNEDGNGAPTAV
PCIGPDELPPPYQQSTNTGGVPMVTCRVCQHMIDITTKREQHVVKCTHCN
EATPIRNAPAGKKYVRCPCNCLLICKSSSQRIACPRPNCKRIINLAPSPV
TPPVPTMPGMCRVTCGHCSDTFLFNTYHNALARCPHCRKVSSVGSRFANS
RAVMFAIVALVFLITGIAVTIGTYSIASDHGGMYFLYVALFVISGCMLAR
SAYYFRLKVSAIDGPMASFLDH
BO19671.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6707-PC | 266 | CG6707-PC | 1..266 | 1..266 | 1442 | 100 | Plus |
CG6707-PA | 266 | CG6707-PA | 1..266 | 1..266 | 1442 | 100 | Plus |
CG6707-PB | 231 | CG6707-PB | 8..231 | 43..266 | 1223 | 100 | Plus |