Clone BO19671 Report

Search the DGRC for BO19671

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG6707-RA
Protein status:BO19671.pep: Imported from assembly
Sequenced Size:832

Clone Sequence Records

BO19671.complete Sequence

832 bp assembled on 2009-05-13

GenBank Submission: KX799107

> BO19671.complete
GAAGTTATCAGTCGACATGGCGGATCCAGAGCGACAAAGCCTGATCAACA
AGGACGACGGCAATGGCTACAATTCCGTGGACGCCGTGGACGAGGGTGCC
GATAATCCCGGCAGCAACTCATCGGTGGCCACAAACGAGGACGGCAATGG
AGCACCGACCGCAGTGCCTTGCATTGGACCCGATGAGCTGCCGCCGCCGT
ATCAGCAGAGTACCAACACCGGAGGCGTCCCGATGGTCACCTGTCGGGTA
TGTCAACACATGATTGACATCACCACGAAGCGGGAGCAGCACGTGGTCAA
GTGCACCCACTGCAATGAGGCTACTCCCATTCGGAACGCTCCAGCGGGCA
AGAAGTATGTTCGCTGCCCATGCAACTGTTTGTTAATCTGCAAGAGCTCG
TCGCAGCGAATCGCTTGTCCAAGGCCCAATTGCAAGAGGATCATCAACCT
GGCCCCAAGTCCCGTCACCCCGCCCGTGCCAACCATGCCGGGCATGTGCC
GCGTCACTTGTGGCCACTGTTCGGACACGTTTTTGTTCAACACGTATCAC
AACGCCTTGGCCCGGTGTCCACACTGCAGGAAGGTCTCATCGGTGGGCTC
GCGCTTTGCCAACAGCCGCGCCGTGATGTTCGCCATCGTGGCGCTGGTGT
TCCTCATCACAGGCATCGCTGTAACTATCGGCACATACTCGATTGCTTCG
GATCATGGTGGCATGTACTTCCTCTACGTGGCGCTGTTCGTGATTTCGGG
TTGCATGCTGGCCAGGTCCGCCTACTATTTCCGCCTTAAAGTGAGCGCCA
TCGATGGGCCAATGGCAAGCTTTCTAGACCAT

BO19671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6707-RC 801 CG6707-PC 1..798 17..814 3990 100 Plus
CG6707-RA 801 CG6707-PA 1..798 17..814 3990 100 Plus
CG6707-RB 696 CG6707-PB 22..693 143..814 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6707-RC 2135 CG6707-RC 382..1186 17..821 3995 99.8 Plus
CG6707-RA 1954 CG6707-RA 201..1005 17..821 3995 99.8 Plus
CG6707-RB 1666 CG6707-RB 39..717 143..821 3365 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9896179..9896388 535..326 1050 100 Minus
3L 28110227 3L 9896454..9896636 325..143 915 100 Minus
3L 28110227 3L 9895957..9896123 701..535 835 100 Minus
3L 28110227 3L 9897928..9898055 144..17 640 100 Minus
3L 28110227 3L 9895756..9895877 821..700 580 98.4 Minus
Blast to na_te.dros performed on 2014-11-27 07:38:26 has no hits.

BO19671.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:57 Download gff for BO19671.complete
Subject Subject Range Query Range Percent Splice Strand
CG6707-RC 382..1179 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:51 Download gff for BO19671.complete
Subject Subject Range Query Range Percent Splice Strand
CG6707-RA 201..998 17..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:07 Download gff for BO19671.complete
Subject Subject Range Query Range Percent Splice Strand
CG6707-RA 201..998 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:07 Download gff for BO19671.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9895761..9895876 701..816 98 <- Minus
3L 9895958..9896122 536..700 100 <- Minus
3L 9896179..9896388 326..535 100 <- Minus
3L 9896454..9896635 144..325 100 <- Minus
3L 9897929..9898055 17..143 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:51 Download gff for BO19671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9891029..9891155 17..143 100   Minus
arm_3L 9888861..9888976 701..816 98 <- Minus
arm_3L 9889058..9889222 536..700 100 <- Minus
arm_3L 9889279..9889488 326..535 100 <- Minus
arm_3L 9889554..9889735 144..325 100 <- Minus

BO19671.pep Sequence

Translation from 16 to 832

> BO19671.pep
MADPERQSLINKDDGNGYNSVDAVDEGADNPGSNSSVATNEDGNGAPTAV
PCIGPDELPPPYQQSTNTGGVPMVTCRVCQHMIDITTKREQHVVKCTHCN
EATPIRNAPAGKKYVRCPCNCLLICKSSSQRIACPRPNCKRIINLAPSPV
TPPVPTMPGMCRVTCGHCSDTFLFNTYHNALARCPHCRKVSSVGSRFANS
RAVMFAIVALVFLITGIAVTIGTYSIASDHGGMYFLYVALFVISGCMLAR
SAYYFRLKVSAIDGPMASFLDH

BO19671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6707-PC 266 CG6707-PC 1..266 1..266 1442 100 Plus
CG6707-PA 266 CG6707-PA 1..266 1..266 1442 100 Plus
CG6707-PB 231 CG6707-PB 8..231 43..266 1223 100 Plus