Clone BO19673 Report

Search the DGRC for BO19673

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG6673-RA
Protein status:BO19673.pep: Imported from assembly
Sequenced Size:787

Clone Sequence Records

BO19673.complete Sequence

787 bp assembled on 2009-05-13

GenBank Submission: KX799270

> BO19673.complete
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CCACCAAGCCCGAGCTGCCAGAAGATGGAGTTCCTCGTTTCTTTTCCATG
GCATTCTGCCCCTTCAGCCACCGAGTTCGTCTGATGCTGGCCGCCAAACA
TATTGAACATCATAAGATCTACGTCGATTTGATTGAGAAGCCTGAATGGT
ACAAGGATTTCAGTCCTCTGGGCAAAGTGCCAGCCCTGCAGCTTACTGGG
GTGAAGGACCAACCGACCCTCGTGGAGTCGCTCATCATAGCAGAGTACTT
GGACCAGCAATATCCCCAGACGCGACTCTTTCCCACGGATCCGCTTCAGA
AGGCGCTGGACAAGATTCTAATCGAACGTTTTGCTCCAGTGGTCAGTGCC
ATTTATCCTGTGCTGACTTGTAATCCCAACGCTCCGAAAGATGCCATACC
GAACTTCGAGAATGCCTTGGATGTTTTTGAAGTGGAGTTGGGCAAAAGAG
GAACGCCCTACTTTGCCGGCCAGCACATTGGAATCGTGGACTACATGATT
TGGCCTTGGTTCGAACGTTTTCCCAGCATGAAGATCAATACGGAGCAAAA
GTATGAGCTGGATACAAAACGATTTGAGAAGCTGCTCAAGTGGCGCGATT
TGATGACCCAGGATGAGGTTGTGCAGAAGACAGCTTTGGATGTCCAGTTG
CATGCTGAGTTCCAGAAATCGAAGACCCTTGGAAATCCCCAGTACGACAT
TGCCTTCAAGGGTACACCAGCAAGCTTTCTAGACCAT

BO19673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RA 756 CG6673-PA 1..753 17..769 3765 100 Plus
GstO2-RB 753 CG6673-PB 1..215 17..231 265 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RA 932 CG6673-RA 71..823 17..769 3765 100 Plus
GstO2-RB 912 CG6673-RB 71..285 17..231 265 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8521732..8522319 634..47 2940 100 Minus
3L 28110227 3L 8521538..8521673 769..634 680 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:01:49 has no hits.

BO19673.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:40:50 Download gff for BO19673.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RA 70..822 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:15 Download gff for BO19673.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 71..823 17..771 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:16 Download gff for BO19673.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RA 71..823 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:16 Download gff for BO19673.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8521536..8521672 635..771 98 <- Minus
3L 8521732..8522318 48..634 100 <- Minus
3L 8523401..8523431 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:15 Download gff for BO19673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8514636..8514772 635..771 98 <- Minus
arm_3L 8514832..8515418 48..634 100 <- Minus
arm_3L 8516501..8516531 17..47 100   Minus

BO19673.pep Sequence

Translation from 16 to 787

> BO19673.pep
MALPQKHFKRGSTKPELPEDGVPRFFSMAFCPFSHRVRLMLAAKHIEHHK
IYVDLIEKPEWYKDFSPLGKVPALQLTGVKDQPTLVESLIIAEYLDQQYP
QTRLFPTDPLQKALDKILIERFAPVVSAIYPVLTCNPNAPKDAIPNFENA
LDVFEVELGKRGTPYFAGQHIGIVDYMIWPWFERFPSMKINTEQKYELDT
KRFEKLLKWRDLMTQDEVVQKTALDVQLHAEFQKSKTLGNPQYDIAFKGT
PASFLDH

BO19673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-PA 251 CG6673-PA 1..251 1..251 1339 100 Plus
GstO2-PB 250 CG6673-PB 1..248 1..248 890 66.3 Plus
GstO3-PA 241 CG6776-PA 5..239 6..245 624 48.3 Plus
se-PA 243 CG6781-PA 5..241 6..248 575 43.6 Plus
GstO1-PA 254 CG6662-PA 5..245 6..247 572 45.9 Plus