Clone BO19678 Report

Search the DGRC for BO19678

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:196
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG9410-RB
Protein status:BO19678.pep: Imported from assembly
Sequenced Size:760

Clone Sequence Records

BO19678.complete Sequence

760 bp assembled on 2009-05-13

GenBank Submission: KX799062

> BO19678.complete
GAAGTTATCAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACG
TCAGAATCCTATGGCCCCTTATTGAAACAAGGTCAGCAGGTAAATGTAAA
TTACATAACCCGAGGCCGACTCCAAACCGTAACATTGCGGCAGCAAAATT
GATCGTGACACTCAGATTGCTCTTATCCTGTTGCAGTGGAGGACACCAGC
GCAGCTTCTCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTC
CGCAAAAAACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCAT
GCAGGACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCG
TGCCGTATGTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTC
AAGGCGGACCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTC
GCAGGTGACCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATG
GACGTCTGTTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTC
AAGGACATACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTT
CAAGTCCCTCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCT
GCGATCAAATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGT
CCGCCCTCAATCCGCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTT
TCTAGACCAT

BO19678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RB 729 CG9410-PB 1..726 17..742 3630 100 Plus
CG9410-RA 624 CG9410-PA 64..621 185..742 2790 100 Plus
CG9410-RE 123 CG9410-PE 1..73 17..89 365 100 Plus
CG9410-RA 624 CG9410-PA 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RB 930 CG9410-RB 71..796 17..742 3630 100 Plus
CG9410-RE 833 CG9410-RE 140..699 183..742 2800 100 Plus
CG9410-RA 891 CG9410-RA 200..757 185..742 2790 100 Plus
CG9410-RE 833 CG9410-RE 71..143 17..89 365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6669491..6669942 291..742 2260 100 Plus
2R 25286936 2R 6669160..6669434 17..291 1375 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:34 has no hits.

BO19678.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:41:23 Download gff for BO19678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 583..1308 17..744 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:13 Download gff for BO19678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RB 71..796 17..744 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:46 Download gff for BO19678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RB 71..796 17..744 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:46 Download gff for BO19678.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6669160..6669434 17..291 100 -> Plus
2R 6669492..6669942 292..744 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:13 Download gff for BO19678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2556665..2556939 17..291 100 -> Plus
arm_2R 2556997..2557447 292..744 99   Plus

BO19678.pep Sequence

Translation from 16 to 760

> BO19678.pep
MLKGSTLKALDVRILWPLIETRSAGKCKLHNPRPTPNRNIAAAKLIVTLR
LLLSCCSGGHQRSFSSSTHRSYITFNDFRKKHRWYTKKELVGYSMQDMYS
VVSDVSNYHKFVPYVKRSDVHSRGSEGFKADLIVGFPPLNEAYTSQVTLV
PPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSCVLDFKVSFEFKSLLH
SNVANIFFDLICDQMENAFIQEVRRRSGPPSIRSHVLTSDRSASFLDH

BO19678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-PB 242 CG9410-PB 1..242 1..242 1278 100 Plus
CG9410-PA 207 CG9410-PA 1..207 1..242 1047 85.5 Plus