BO19683.complete Sequence
1795 bp assembled on 2010-10-20
GenBank Submission: KX795880
> BO19683.complete
GAAGTTATCAGTCGACATGTTTTGCTACCAGTGCCCCCCAGCCCTCCATC
CATGCGGCCCCCACCCGCCGCGCCTGCCCACCCTCGACTACCCGTTCGCC
GCCACCCATCCATATACCAGCTACTCGTATCATCCTGCCATACACGATGA
GACTTTTGTCCGGCGGAAGCAGCGTCGAAATCGCACCACCTTCACACTGC
AACAGCTGGAGGAGCTGGAGACGGCCTTTGCCCAGACCCACTATCCGGAT
GTATTTACTCGCGAGGATCTGGCCATGAAAATCAACCTGACCGAAGCACG
GGTTCAGGTCTGGTTCCAGAACCGCAGGGCCAAGTGGCGCAAGGCGGAGC
GCCTCAAGGACGAGCAGCGGAAGCGGGAAAATGGAGAGAGCAGCAGCTCC
CTGGATAAGCTGCACGACTCCCGTGAATCCTCGCCAGACATAACGGGTGA
AATAGACGATGACATGGATGACTTGCCGCCTCGTCAGAGGTCGCACAGTC
CGCTGGCCAACGGACAAATGGAGCAGCAGCACTCGCACTCGCATTCCCAC
TCCCATTCCCGCAGTCCTGGCGGCGGCATGCACCTGGACTCCAGCGACAA
CGAGCGCCCGTTGTCCTCCAACCAGTTGACCGCCACTCCGCACTCTGCCT
CCCAGTCGCTGGGCTCCATCAGTGCCGGATCCCCCTCCCCATCGGGCATG
CACAGGGAACGGGAGCACACACCTCTGGTCGGAGGCGGTGGTCAGGGACC
GAGCAGCCCCTCAAACTCGCGGAACACCGACTCCCCCATCGAGGTGGGCG
GACCAATGTCCCTGACTACGGGCTCCAGGATGGCGGCCTCCTCCAACAAT
TCGGCCTCATCCACGCCCACGCCCACCACCCCACATGCCCCCCAGATGCC
GCACTCTTCGGCGGCTGCGGCTGCCGCTTTTGGAAGCCACATCTTTGGCA
ACTTTGGAGGTGGCAGCAATGCCAGCGATAGCAACTGCGGCTTTCGTCCC
GTTCTGAGTGAGCAGAGCGCCGTGGCAGCTGCGGCGGCGGCAGCAGCGGC
CCAGCGGAGCGCCAACCACCCACCGCTTTTCCTGCCACCCCACTTGGCCG
CCCAGTTTACCCATCAGCCGCTTTTCCCGGGCCTGAAAGGCGTCTCTCCA
TTCCAGAGCCTGTGCTCATGCTGCTCCCTGAAGCCCCCGCCGCCACCGGG
CTCATCGGTGGTGGCTCCACTGAGCATTCCGGTCAGCAGCAGCTCGGCGG
CCAGTTCGCCGGAATCGCCAAAGTCCTCCGGCCAGGGATCCGTTCATGAT
CCGCGGTCCAATTCGGTGGCCGAACTGCGGCGGAAGGCGCAGGAGCATTC
GGCGGCACTTTTGCAATCGCTGCACGCGGCAGCTGCTGCAGGCTTGGCTT
TTCCGGGCCTCCACTTGCCACCCCTGTCCTTCGCCCACCATCCGGCCTTG
GGGCAGCATGTGGTCAATCACAACAATAACAACACGATGAGAATGAAGCA
CGAGGCTCAGGACATGACCATGAATGGTCTGGGCCCCGGCTCAGGATCTG
GTTCGGGATCAGGTTCGGCAGGAGGCGGCACATCATCGGCCGCTCTTTTG
GATCTGGCCGAATCGGCAGTTGCATATCAGCAGCAGCAACATGCCACATT
GTCGCCACCAACCACGCCCACGCAGCAATCATCCGGGGGCGTGGCAGCAA
CGGAGGGCTCTCCAGGATCAGGAGCGATTGCAGGATCGGGTTCATTGAAT
GGAAACGTGGTGCTGACCAAAATGGAAGCAAGCTTTCTAGACCAT
BO19683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34340-RF | 1764 | CG34340-PF | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG34340-RE | 1764 | CG34340-PE | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG11294-RB | 786 | CG11294-PB | 70..243 | 170..343 | 270 | 77 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34340-RF | 2989 | CG34340-RF | 590..2350 | 17..1777 | 8805 | 100 | Plus |
| CG34340-RE | 2612 | CG34340-RE | 590..2350 | 17..1777 | 8805 | 100 | Plus |
| CG11294-RB | 1291 | CG11294-RB | 227..400 | 170..343 | 270 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3690836..3691475 | 1138..1777 | 3200 | 100 | Plus |
| 2L | 23513712 | 2L | 3684060..3684633 | 408..981 | 2870 | 100 | Plus |
| 2L | 23513712 | 2L | 3690320..3690480 | 980..1140 | 805 | 100 | Plus |
| 2L | 23513712 | 2L | 3678360..3678466 | 203..309 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 3683864..3683968 | 305..409 | 525 | 100 | Plus |
| 2L | 23513712 | 2L | 3673205..3673301 | 17..113 | 485 | 100 | Plus |
| 2L | 23513712 | 2L | 3678207..3678302 | 110..205 | 465 | 99 | Plus |
| 3R | 32079331 | 3R | 18237854..18237994 | 203..343 | 255 | 78.7 | Plus |
| 2L | 23513712 | 2L | 578177..578314 | 206..343 | 225 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:18:22 has no hits.
BO19683.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:20 Download gff for
BO19683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RD | 69..1822 | 24..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:37 Download gff for
BO19683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RE | 597..2350 | 24..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:39 Download gff for
BO19683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34340-RE | 597..2350 | 24..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:39 Download gff for
BO19683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3673212..3673301 | 24..113 | 100 | -> | Plus |
| 2L | 3678211..3678302 | 114..205 | 100 | -> | Plus |
| 2L | 3678363..3678464 | 206..307 | 100 | -> | Plus |
| 2L | 3683867..3683968 | 308..409 | 100 | -> | Plus |
| 2L | 3690322..3690479 | 982..1139 | 100 | -> | Plus |
| 2L | 3684062..3684633 | 410..981 | 100 | -> | Plus |
| 2L | 3690838..3691475 | 1140..1779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:37 Download gff for
BO19683.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3678363..3678464 | 206..307 | 100 | -> | Plus |
| arm_2L | 3683867..3683968 | 308..409 | 100 | -> | Plus |
| arm_2L | 3678211..3678302 | 114..205 | 100 | -> | Plus |
| arm_2L | 3673212..3673301 | 24..113 | 100 | -> | Plus |
| arm_2L | 3684062..3684633 | 410..981 | 100 | -> | Plus |
| arm_2L | 3690322..3690479 | 982..1139 | 100 | -> | Plus |
| arm_2L | 3690838..3691475 | 1140..1779 | 99 | | Plus |
BO19683.pep Sequence
Translation from 16 to 1795
> BO19683.pep
MFCYQCPPALHPCGPHPPRLPTLDYPFAATHPYTSYSYHPAIHDETFVRR
KQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQVWF
QNRRAKWRKAERLKDEQRKRENGESSSSLDKLHDSRESSPDITGEIDDDM
DDLPPRQRSHSPLANGQMEQQHSHSHSHSHSRSPGGGMHLDSSDNERPLS
SNQLTATPHSASQSLGSISAGSPSPSGMHREREHTPLVGGGGQGPSSPSN
SRNTDSPIEVGGPMSLTTGSRMAASSNNSASSTPTPTTPHAPQMPHSSAA
AAAAFGSHIFGNFGGGSNASDSNCGFRPVLSEQSAVAAAAAAAAAQRSAN
HPPLFLPPHLAAQFTHQPLFPGLKGVSPFQSLCSCCSLKPPPPPGSSVVA
PLSIPVSSSSAASSPESPKSSGQGSVHDPRSNSVAELRRKAQEHSAALLQ
SLHAAAAAGLAFPGLHLPPLSFAHHPALGQHVVNHNNNNTMRMKHEAQDM
TMNGLGPGSGSGSGSGSAGGGTSSAALLDLAESAVAYQQQQHATLSPPTT
PTQQSSGGVAATEGSPGSGAIAGSGSLNGNVVLTKMEASFLDH
BO19683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34340-PF | 587 | CG34340-PF | 1..587 | 1..587 | 3088 | 100 | Plus |
| CG34340-PE | 587 | CG34340-PE | 1..587 | 1..587 | 3088 | 100 | Plus |
| oc-PE | 539 | CG12154-PE | 28..446 | 12..427 | 333 | 27.3 | Plus |
| oc-PD | 542 | CG12154-PD | 28..449 | 12..427 | 328 | 27.3 | Plus |
| oc-PG | 542 | CG12154-PG | 28..449 | 12..427 | 328 | 27.3 | Plus |
