BO19691.complete Sequence
2725 bp assembled on 2010-10-20
GenBank Submission: KX795351
> BO19691.complete
GAAGTTATCAGTCGACATGTCGCAGGTGCTTAGCCCCCACAAACAGGGCG
TGTCGGAGGCGGATGCGTTGGACTACACGAACAGCAGCTCGATCATCGAG
TTCCTGGCCAAAGAGCAGGACTGCGGCGGAATACTGAACGATCCGGACCC
GGAGTCCATATTCCAGGAGGTGAGTCGCCTGTCCGACAGCACAGATATGC
GATCCGTGGATGAATTGCTGCAGGAAGCGGAGCGCCTGATCCAACAGCAG
TTGCGTCTCGGCGGTATTGTTCCAAAACTGGACGCTTCCGGGCCCCCTGC
TCCGACCAAAACCCTCGGAGAAGAAGCTGCCACCGGTGGTGATGGCTCTT
CCTCATCCCCGCAGTCCTCGCCGCATAGCAGCATACGGCTGAATACACGC
TATACCCATCGCATCGAGCATTCGCCTGCTCCCTTGGCGCCAAAAACCGT
CGCAGTCAATGGCAGAGTCCGGCCCAGATCCGGTTCCAAATCGTCGGCCT
CGCCAACATCGGTGCAGACGCCGCTAGAAAGCAGCAATGGATGCGGCTTT
GCCGCCTTCGTGGATAACCTGCCATCGGCGTCGGTCATTTCCGAGGAGTC
CACGCCCAAGGACATGGACATGGAGAACCATACGGCGGCCATGGCAAAGC
TGCAACTCCAGCAGCTTCAGGATAATACCGATGACGACGAGGATACGATG
GAGGAGATCACCGAGGCGGAGGTGGACGCCCCCATATTTTCGCGAGCTGA
GGACACTGGCAAAGAGGTCAGGAGTCCGCCTGAAAGGCAGTTTAAGAGTC
AAGGGCGTTCATACATCCAGCCCAGTCAGCCGATTCGACCGATGGCCAGC
TACAGCGAGAAGGCGGTGGGCAGCTCACCCAAGCGCATGGTCAGCACCTT
GACCTCACCCATCGAGCAGATCGCCAGTAGTGTTTCGCGGGAGCATGCGC
TTAAGCTGGAGATCGAGCAACTGCAGGAGCGACTCAAGGACACCGAGGAG
CGTCTGGCCTCCGTTCGCCTTCAGAGCGACTCGCTGTCGCAGACGCAACG
TGCGCTGCGGGAGCACAACAGCCGGCTGCAGGAGGAGTCCGAGATGCTAA
AGCTGGACGTGCAGCATCTCAATGAGTGCGCCAATGTCTTGAGGTCGGAA
CTGCAGGCGGCTCGCAGGGATCGTGGCGAGGCGCTCCAGATGCAGCGCTC
CCTGCGAGATGAACTCGAGGAGGCGAACCAGGAGCGGCGGCGAACTGGTG
AGGGTAAAGAGAAGGACAGCCGCGTCATCCAGGATCTGCAACGCCAGTGC
CGCGAGATGGAGCGCATACTGATGCGCAAGCATCCGGACTCCGTGTCCGC
TCTGATAGTGGCGTCCAAGAGTTCGGGCATGTGTCCGCTTAACGACCAGG
AGAACGTGAATAGTCGCAAACTGCTGGAGCAGCGCATCGCCCAGCTCGAA
TCGGATGCCAAGGAGCAGGATCGCAAGGCGCAACAGATTCTGGCCAATGT
CCAGGCGCGCTTCAATTCGGTGCAGGCCAAATATGAGACTCACATCGCGG
ACCTGGAGACGCAGGTTTTAAGCCTTCAGGAGATAAACACAAAACTAAAC
GAGCAGATAGAATCACAGGTGCGCACCCTAGATCGGTATATGCAAAAGAG
GGCGGATAGATACTACAACAATTGCACCCAAACTGAGCCATTAGAAGAGG
ATGATGTATCAGTCGGCGGTGGAGTAAACCACGGACGAGCTACCCCGGTT
AGCTCGAACACAATGGGCACCCAAACCCAGGCGGCGAATGGAACGCGGGA
TCATAGTACCAATACCATTGGCTGCCCCTCGCCGGCACTTGTGTGCCAGC
AGCAGCATCTCCACCAAGCGCATGGCCACCTCCATCCACATGCCCCGTCC
GCAAGCAGCAGCACCAGCAGCACCGCCAATTCCACGCCGAACACGTCGCG
TCCGAACTCGAAACAAAGTGGCGGTCAAAGGCGTTCGCCACTGGTCACCG
CGGGCCCCTCAAAGCTGCCCATCTCGCAGTCGGACTCAACGCTCTCACTG
CTCAGCCATGGCGGCGGAGGATCCAAGGAGGAGGCACAGTTGCTCAGCTC
CGTGAGGAGTATGCGCGTGGATCTGGCCATTAAAAACAAGGCAATGCAGC
GTTTAACACGGGAGTTGGATGAATGCAAAAAGACCATACGGAAGCTGCAG
CGGGACAAGGAGGGTAGTGGCTCCGGCAGCCAAACAGGCAGCAAACTGGA
TCTAAGGTCCCAGGCTAGCGGCGGAGCCATGCAGCAGAGGCGCTCCAGTG
GCTATGATCACCATCACCACAGTGATCACATTCCGGCGGCCACCGAAAGT
CAGGCTCTGAAGGAGGCCCAAAACAAGTACCGTCTGCTGGAGGCCGACTA
TAAAACTCTTCATGACAAGCGGCTGCAGGATCTGAAGACCCTGCAGAGTG
CCCACGAAAGGGAACTGGCCTCCTGCAACGAGACCGTGCGTATACTGCAG
CAGCGCCTCAACGAGCGGGAGGAGGCACTGACCACCCAGAAGCGGCGCAA
GGTGCCCGTGGATTACTATGCCCTGAAAGCCAAGGTATCGCTTTTGGAAA
GGAGGCACTCGGAGCGGGAGGAGAGACTTCATATGCTGGTGGAGGCACTC
AGCAAGGGACGGCTCAACGGTGCTCTCGAGGATCTGATGCAGGAGAACAA
CAACAAGGCAAGCTTTCTAGACCAT
BO19691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:07:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42699-RC | 2694 | CG42699-PC | 1..2691 | 17..2707 | 13455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42699-RC | 4296 | CG42699-RC | 362..3053 | 16..2707 | 13460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5764914..5765595 | 16..697 | 3410 | 100 | Plus |
| X | 23542271 | X | 5785455..5786122 | 1571..2238 | 3340 | 100 | Plus |
| X | 23542271 | X | 5784439..5785100 | 697..1358 | 3310 | 100 | Plus |
| X | 23542271 | X | 5785164..5785380 | 1356..1572 | 1085 | 100 | Plus |
| X | 23542271 | X | 5787636..5787832 | 2235..2431 | 985 | 100 | Plus |
| X | 23542271 | X | 5787895..5788050 | 2432..2587 | 780 | 100 | Plus |
| X | 23542271 | X | 5788207..5788333 | 2581..2707 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:07:08 has no hits.
BO19691.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:47:32 Download gff for
BO19691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4064-RA | 1..2010 | 698..2709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:29:09 Download gff for
BO19691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42699-RC | 363..3053 | 17..2709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:50 Download gff for
BO19691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42699-RC | 363..3053 | 17..2709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:50 Download gff for
BO19691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5764915..5765595 | 17..697 | 100 | -> | Plus |
| X | 5784440..5785100 | 698..1358 | 100 | -> | Plus |
| X | 5785167..5785380 | 1359..1572 | 100 | -> | Plus |
| X | 5785457..5786121 | 1573..2237 | 100 | -> | Plus |
| X | 5787639..5787832 | 2238..2431 | 100 | -> | Plus |
| X | 5787895..5788047 | 2432..2584 | 100 | -> | Plus |
| X | 5788211..5788333 | 2585..2709 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:29:09 Download gff for
BO19691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5682244..5682366 | 2585..2709 | 98 | | Plus |
| arm_X | 5681672..5681865 | 2238..2431 | 100 | -> | Plus |
| arm_X | 5681928..5682080 | 2432..2584 | 100 | -> | Plus |
| arm_X | 5658948..5659628 | 17..697 | 100 | -> | Plus |
| arm_X | 5678473..5679133 | 698..1358 | 100 | -> | Plus |
| arm_X | 5679200..5679413 | 1359..1572 | 100 | -> | Plus |
| arm_X | 5679490..5680154 | 1573..2237 | 100 | -> | Plus |
BO19691.pep Sequence
Translation from 16 to 2725
> BO19691.pep
MSQVLSPHKQGVSEADALDYTNSSSIIEFLAKEQDCGGILNDPDPESIFQ
EVSRLSDSTDMRSVDELLQEAERLIQQQLRLGGIVPKLDASGPPAPTKTL
GEEAATGGDGSSSSPQSSPHSSIRLNTRYTHRIEHSPAPLAPKTVAVNGR
VRPRSGSKSSASPTSVQTPLESSNGCGFAAFVDNLPSASVISEESTPKDM
DMENHTAAMAKLQLQQLQDNTDDDEDTMEEITEAEVDAPIFSRAEDTGKE
VRSPPERQFKSQGRSYIQPSQPIRPMASYSEKAVGSSPKRMVSTLTSPIE
QIASSVSREHALKLEIEQLQERLKDTEERLASVRLQSDSLSQTQRALREH
NSRLQEESEMLKLDVQHLNECANVLRSELQAARRDRGEALQMQRSLRDEL
EEANQERRRTGEGKEKDSRVIQDLQRQCREMERILMRKHPDSVSALIVAS
KSSGMCPLNDQENVNSRKLLEQRIAQLESDAKEQDRKAQQILANVQARFN
SVQAKYETHIADLETQVLSLQEINTKLNEQIESQVRTLDRYMQKRADRYY
NNCTQTEPLEEDDVSVGGGVNHGRATPVSSNTMGTQTQAANGTRDHSTNT
IGCPSPALVCQQQHLHQAHGHLHPHAPSASSSTSSTANSTPNTSRPNSKQ
SGGQRRSPLVTAGPSKLPISQSDSTLSLLSHGGGGSKEEAQLLSSVRSMR
VDLAIKNKAMQRLTRELDECKKTIRKLQRDKEGSGSGSQTGSKLDLRSQA
SGGAMQQRRSSGYDHHHHSDHIPAATESQALKEAQNKYRLLEADYKTLHD
KRLQDLKTLQSAHERELASCNETVRILQQRLNEREEALTTQKRRKVPVDY
YALKAKVSLLERRHSEREERLHMLVEALSKGRLNGALEDLMQENNNKASF
LDH
BO19691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42699-PC | 897 | CG42699-PC | 1..897 | 1..897 | 4520 | 100 | Plus |
| zip-PH | 1964 | CG15792-PH | 851..1437 | 314..889 | 166 | 19.4 | Plus |
| zip-PG | 1971 | CG15792-PG | 843..1429 | 314..889 | 166 | 19.4 | Plus |
| zip-PE | 1971 | CG15792-PE | 843..1429 | 314..889 | 166 | 19.4 | Plus |
| zip-PC | 1971 | CG15792-PC | 843..1429 | 314..889 | 166 | 19.4 | Plus |
