BO19743.complete Sequence
1306 bp assembled on 2009-05-13
GenBank Submission: KX799325
> BO19743.complete
GAAGTTATCAGTCGACATGTATAGATCACACATCGCTGTCATTTGTGCCT
TCGTGGGCATATTCGTGGGGACAGTTGTCCAGTCTGCTCCTTTTTCCAAT
GATCCTGCAGAGGTCCCAAACTTCTATGAATTGTTCAATAATCCCGATGC
ACACTTATCCTTGACCAATGGTCCCGACACGATCCATTTCATCGAGGAAC
ATGGTTATCCAGTTGAGCGACACTATGTGACCACTGAAGATGGCTACATT
ATCAGCCTCTTCCGAATTCCATACTCGCACAATATCCAAAACCAGCAAGA
AAAGAGGCCCATTGCTTTCATTCAACACGGTCTTTTTGCCAGCTCCGACT
TTTGGCCAAGCTTGGGACCGGATGATGGACTTCCTTTCCTGCTCTCCGAT
GCTGGATACGATGTTTGGCTGGGCAATGCTCGTGGAAACAGATACTCGAA
AAACCATACCTCTCGTCTGACAAGTCATCCGGACTTCTGGCGCTTCAGTT
GGCACGAGATTGGATACTTTGATATTGCCGCAGCTATTGACTATACCCTG
TCCACGGAGAACGGACAGGATCAGAAGGGTATCCACTACATAGGACACTC
CCAAGGCACCACGGTTATGTTTGTGCTGCTGTCCTCAAGACCGGAATATA
ACGACAAGATCAAGACGGCTCACATGCTGGCTCCTGTGGCATTTATGGAT
CACATGGACGATGTTATGGTCAACACCTTGTCTCCTTACCTCGGTTTTAA
CAATATCTACTCGACCCTCTTCTGTTCTCAAGAATTCTTGCCCCACAACG
ATTTCGTCCTGGCTCTGATGTACAGTGTTTGTCTTCCGGAATCGATTGTT
TACAGCTTTTGCAGCAGCAGTAATGAAACAACTACTGAGGAAGGAAGAAC
TAATTCGACCGCCTCTGCGTTGACTTCTGGAGTGATGCCTGCTGGTGTTT
CCACGGATCAAATCCTGCACTACATGCAGGAGCATCAATCGGGACATTTC
CGGCAGTTCGATTTTGGCACCAAAAAGAATATGAAGGTCTATGGAACGGA
AGCCCCAGAGGATTACCCAACTGAGCTAATCACGGCTGAGATGCATCTGT
GGTATTCGGACAGCGATGAGATGGCCGCAGTTGAGGATGTCCTGAGGGTG
GCGGAAACGCTGCCCAACAAGGTGATGCACCATATGGAGGATCCACTATG
GGATCATATGGACTTCGCTCTCAACTGGGAGGTGCGCCAATATATCAATG
ATCCGATTGTAGCCATTCTAAACGAGTACGAGGGGAAGGCAAGCTTTCTA
GACCAT
BO19743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31091-RC | 1275 | CG31091-PC | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| CG31091-RB | 1275 | CG31091-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
| mag-RA | 1200 | CG5932-PA | 303..363 | 388..448 | 185 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31091-RC | 2149 | CG31091-RC | 692..1963 | 17..1288 | 6360 | 100 | Plus |
| CG31091-RB | 1497 | CG31091-RB | 40..1311 | 17..1288 | 6360 | 100 | Plus |
| mag-RA | 1477 | CG5932-RA | 324..384 | 388..448 | 185 | 86.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25900813..25901539 | 181..907 | 3635 | 100 | Plus |
| 3R | 32079331 | 3R | 25901605..25901986 | 907..1288 | 1910 | 100 | Plus |
| 3R | 32079331 | 3R | 25900594..25900758 | 17..181 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 20461006..20461066 | 388..448 | 185 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:36:37 has no hits.
BO19743.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:40 Download gff for
BO19743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RA | 692..1963 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:11 Download gff for
BO19743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 40..1311 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:35 Download gff for
BO19743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31091-RB | 40..1311 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:35 Download gff for
BO19743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25900594..25900758 | 17..181 | 100 | -> | Plus |
| 3R | 25900814..25901539 | 182..907 | 100 | -> | Plus |
| 3R | 25901606..25901986 | 908..1290 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:11 Download gff for
BO19743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21726316..21726480 | 17..181 | 100 | -> | Plus |
| arm_3R | 21726536..21727261 | 182..907 | 100 | -> | Plus |
| arm_3R | 21727328..21727708 | 908..1290 | 99 | | Plus |
BO19743.pep Sequence
Translation from 16 to 1306
> BO19743.pep
MYRSHIAVICAFVGIFVGTVVQSAPFSNDPAEVPNFYELFNNPDAHLSLT
NGPDTIHFIEEHGYPVERHYVTTEDGYIISLFRIPYSHNIQNQQEKRPIA
FIQHGLFASSDFWPSLGPDDGLPFLLSDAGYDVWLGNARGNRYSKNHTSR
LTSHPDFWRFSWHEIGYFDIAAAIDYTLSTENGQDQKGIHYIGHSQGTTV
MFVLLSSRPEYNDKIKTAHMLAPVAFMDHMDDVMVNTLSPYLGFNNIYST
LFCSQEFLPHNDFVLALMYSVCLPESIVYSFCSSSNETTTEEGRTNSTAS
ALTSGVMPAGVSTDQILHYMQEHQSGHFRQFDFGTKKNMKVYGTEAPEDY
PTELITAEMHLWYSDSDEMAAVEDVLRVAETLPNKVMHHMEDPLWDHMDF
ALNWEVRQYINDPIVAILNEYEGKASFLDH
BO19743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31091-PC | 424 | CG31091-PC | 1..424 | 1..424 | 2293 | 100 | Plus |
| CG31091-PB | 424 | CG31091-PB | 1..424 | 1..424 | 2293 | 100 | Plus |
| CG31089-PA | 421 | CG31089-PA | 28..417 | 35..424 | 1311 | 59.2 | Plus |
| mag-PA | 399 | CG5932-PA | 36..399 | 59..424 | 830 | 45.1 | Plus |
| CG2772-PA | 416 | CG2772-PA | 39..410 | 59..424 | 815 | 42.7 | Plus |
