BO19772.complete Sequence
1387 bp assembled on 2009-05-13
GenBank Submission: KX795779
> BO19772.complete
GAAGTTATCAGTCGACATGAGGCAAGTGACACGCGCATCGTCGGGTCAAA
GTCAGGCCCTCCTTTCATGCCTCATTATCGCCGTGTGCGCCGCATTAATA
ATTCAATCTGGGCATATCCAGGGTGTGAAAGCTCAGCCGGGACGCGAACC
CGGCGAGGTGAATTCGCGGCAGCCCGGCAACGGAAATGGGACCACTGGCC
ACCGCGTGCCGCGCAGTGTGTTCCACGTGCGCTGGAACCCCAACGAGAAG
TTCATCGTGGAGAGTCGCGAGAATCCGGCCATCAACTCGTCCAAGCTGGC
TCCGCATCCCCGACTCAAGGTCTCGAAGAACACCAAGCTCACGCTGAGCC
CCAAGCTGTATCTCTGCCACGACAAGCACTCGGAGCTGTGCCACAACAAG
ACCCAGCAGTTTCGCCAGCGCATTGTCCGGGCCTTCGAGAAGGCCATGGT
GGAGTCGGTAAACGAGTCGCAGGCGAACCACTACAACGTGGACTACAAGC
CCGTCTTTGGGGACAGCTTCGAGGAGCAGTACTACCCCTCGACCTGCCTG
GTCATGGAGGCGGGCGTGCGGGTCCTGCGCCGCAAGGACGCGCCCTTCAA
CAAACTGCCCTTCGGCCGGCTCTTTCCGCGTCAAAAGCTCTTCCGCAACG
TCAAAGACATCAAGACCTGCGCCATCGTCTCCAGTGCGGGATCCTTGGCT
GGCTCCAAGTTAGGCCGCTTCATTGACACGCACGACATTGTGATGAGATT
CAATCATGCGCCCACGCAAGGACACGAGGTGGATGTTGGCAGCAAAACCA
CGATCCGTGTGGTGAATTCGCAAGTGGTCACCAAGCCGGAATTCGACTTC
ACCCGAGCCCCCATCTTCCGGAACGTCACGATCGCCGCCTGGGATCCGGG
CAAGTACAATGGCACACTGGAGGATTGGCTCACTAGCGCTGACTACGACC
TCTTTTCCAACTACGAGCTGTACAGGCGGCGCTATCCGAAGTCACGTGCC
TTCCTCATCGATCCCCACTCCGTGTGGCGCCTGTGGCAGAGTCTGCAGAT
GTTTGCCGGAAACCGGCCGATAAGCAAGAATCCCCCCAGTTCCGGTTTTA
TAGGACTGGCCCTGCTCCTGCCGCACTGTCCCCAGGTGGACTTCGTGGAG
TACGTGCCGTCCACACGACTCAATGGACGCTGTCACTACTACAGCAAAGA
GATGAATTCCGCCTGCACATTCGGCTCCTGGCATCCGCTGGCCGCCGAGA
AGCTGATGGCCCTGGACATGAACATGGCGGAGGACGACGACATGTCGGTC
TTCCAGTTCGGCATCCTGCGGATTCGCCGGCCGGACAAACTGCTCTGCGG
CTTCAACTTCTTTGGCTACGCAAGCTTTCTAGACCAT
BO19772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ST6Gal-RA | 1356 | CG4871-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| ST6Gal-RB | 1425 | CG4871-PB | 235..1422 | 182..1369 | 5940 | 100 | Plus |
| ST6Gal-RB | 1425 | CG4871-PB | 1..167 | 17..183 | 835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ST6Gal-RA | 1609 | CG4871-RA | 134..1486 | 17..1369 | 6765 | 100 | Plus |
| ST6Gal-RB | 2229 | CG4871-RB | 919..2106 | 182..1369 | 5940 | 100 | Plus |
| ST6Gal-RB | 2229 | CG4871-RB | 685..851 | 17..183 | 835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24692675..24693218 | 725..182 | 2720 | 100 | Minus |
| 2R | 25286936 | 2R | 24691980..24692260 | 1104..824 | 1405 | 100 | Minus |
| 2R | 25286936 | 2R | 24691545..24691714 | 1369..1200 | 850 | 100 | Minus |
| 2R | 25286936 | 2R | 24693286..24693452 | 183..17 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 24692321..24692421 | 825..725 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 24691776..24691875 | 1201..1102 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:13:55 has no hits.
BO19772.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:39:39 Download gff for
BO19772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 97..1449 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:58 Download gff for
BO19772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 134..1486 | 17..1371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:47 Download gff for
BO19772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ST6Gal-RA | 134..1486 | 17..1371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:47 Download gff for
BO19772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24691542..24691712 | 1202..1371 | 98 | <- | Minus |
| 2R | 24691776..24691873 | 1104..1201 | 100 | <- | Minus |
| 2R | 24691981..24692260 | 824..1103 | 100 | <- | Minus |
| 2R | 24692323..24692420 | 726..823 | 100 | <- | Minus |
| 2R | 24692675..24693217 | 183..725 | 100 | <- | Minus |
| 2R | 24693287..24693452 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:58 Download gff for
BO19772.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20579065..20579235 | 1202..1371 | 98 | <- | Minus |
| arm_2R | 20579299..20579396 | 1104..1201 | 100 | <- | Minus |
| arm_2R | 20579504..20579783 | 824..1103 | 100 | <- | Minus |
| arm_2R | 20579846..20579943 | 726..823 | 100 | <- | Minus |
| arm_2R | 20580198..20580740 | 183..725 | 100 | <- | Minus |
| arm_2R | 20580810..20580975 | 17..182 | 100 | | Minus |
BO19772.pep Sequence
Translation from 16 to 1387
> BO19772.pep
MRQVTRASSGQSQALLSCLIIAVCAALIIQSGHIQGVKAQPGREPGEVNS
RQPGNGNGTTGHRVPRSVFHVRWNPNEKFIVESRENPAINSSKLAPHPRL
KVSKNTKLTLSPKLYLCHDKHSELCHNKTQQFRQRIVRAFEKAMVESVNE
SQANHYNVDYKPVFGDSFEEQYYPSTCLVMEAGVRVLRRKDAPFNKLPFG
RLFPRQKLFRNVKDIKTCAIVSSAGSLAGSKLGRFIDTHDIVMRFNHAPT
QGHEVDVGSKTTIRVVNSQVVTKPEFDFTRAPIFRNVTIAAWDPGKYNGT
LEDWLTSADYDLFSNYELYRRRYPKSRAFLIDPHSVWRLWQSLQMFAGNR
PISKNPPSSGFIGLALLLPHCPQVDFVEYVPSTRLNGRCHYYSKEMNSAC
TFGSWHPLAAEKLMALDMNMAEDDDMSVFQFGILRIRRPDKLLCGFNFFG
YASFLDH
BO19772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ST6Gal-PA | 451 | CG4871-PA | 1..451 | 1..451 | 2405 | 100 | Plus |
| ST6Gal-PB | 474 | CG4871-PB | 1..474 | 1..451 | 2371 | 95.1 | Plus |
