BO19802.complete Sequence
717 bp assembled on 2010-09-30
GenBank Submission: KX797353
> BO19802.complete
GAAGTTATCAGTCGACATGGTCTCTTTTTGTGCAACTCTGATTCGACAGT
TTCGGCACAGGTCGGCAGCGGCATTTCAGATTGCGGAGTCCGCCATTTTA
GCTAACAAATCTATAACCCTAGCTTCGTCAGCGTGCAGTGTGAATAGGGG
TCAGTTGCAGTTTGGAATTCAGATTGTTCGCGAATATTCGAAAGCGTCAA
AGATGAGTACTTTGCCTAGGGTGTTTTTTGATATGACCGCCGACAACGAG
CCCCTCGGTCGGATCGTCATGGAGCTGCGCTCCGATGTCGTGCCCAAGAC
CGCCGAGAACTTCCGCGCCTTGTGCACCGGCGAGAAGGGATTCGGGTACA
AGGGCTCCATTTTCCACCGCGTCATCCCCAACTTCATGTGCCAGGGCGGC
GACTTCACCAACCACAACGGCACTGGCGGCAAGTCCATCTACGGCAACAA
GTTCCCCGATGAGAACTTCGAGCTGAAGCACACCGGCTCCGGCATCCTGT
CGATGGCCAACGCTGGCGCCAACACGAACGGCTCCCAGTTCTTTATTTGC
ACTGTGAAGACCGCCTGGTTGGACAACAAGCACGTCGTCTTCGGCGAGGT
CGTCGAGGGACTGGATGTGGTCAAGAAGATCGAATCTTATGGATCGCAGT
CTGGCAAGACCTCCAAGAAGATCATTGTGGCTAACTCTGGTTCTCTTGCA
AGCTTTCTAGACCATTC
BO19802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-RA | 684 | CG9916-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
| CG7768-RB | 495 | CG7768-PB | 64..464 | 269..669 | 745 | 79.1 | Plus |
| CG7768-RA | 495 | CG7768-PA | 64..464 | 269..669 | 745 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-RA | 1227 | CG9916-RA | 35..715 | 17..697 | 3405 | 100 | Plus |
| CG7768-RB | 679 | CG7768-RB | 151..551 | 269..669 | 745 | 79.1 | Plus |
| CG7768-RA | 717 | CG7768-RA | 189..589 | 269..669 | 745 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16318185..16318609 | 697..273 | 2125 | 100 | Minus |
| X | 23542271 | X | 16320079..16320336 | 274..17 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 14218446..14218846 | 269..669 | 745 | 79.1 | Plus |
| 2R | 25286936 | 2R | 17545994..17546154 | 386..546 | 370 | 82 | Plus |
| 2R | 25286936 | 2R | 22645337..22645533 | 543..347 | 280 | 76.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:18:14 has no hits.
BO19802.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 17:32:34 Download gff for
BO19802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 77..757 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:05 Download gff for
BO19802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 35..715 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:15:01 Download gff for
BO19802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp1-RA | 35..715 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:15:01 Download gff for
BO19802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16318183..16318607 | 275..699 | 99 | <- | Minus |
| X | 16320079..16320336 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:05 Download gff for
BO19802.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16212216..16212640 | 275..699 | 99 | <- | Minus |
| arm_X | 16214112..16214369 | 17..274 | 100 | | Minus |
BO19802.pep Sequence
Translation from 16 to 715
> BO19802.pep
MVSFCATLIRQFRHRSAAAFQIAESAILANKSITLASSACSVNRGQLQFG
IQIVREYSKASKMSTLPRVFFDMTADNEPLGRIVMELRSDVVPKTAENFR
ALCTGEKGFGYKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDEN
FELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLD
VVKKIESYGSQSGKTSKKIIVANSGSLASFLDH
BO19802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp1-PA | 227 | CG9916-PA | 1..227 | 1..227 | 1169 | 100 | Plus |
| CG7768-PB | 164 | CG7768-PB | 2..164 | 65..227 | 752 | 83.4 | Plus |
| CG7768-PA | 164 | CG7768-PA | 2..164 | 65..227 | 752 | 83.4 | Plus |
| cyp33-PA | 300 | CG4886-PA | 133..299 | 59..227 | 611 | 68.6 | Plus |
| CG2852-PD | 205 | CG2852-PD | 17..190 | 53..227 | 490 | 54 | Plus |
