BO19805.complete Sequence
733 bp assembled on 2009-05-13
GenBank Submission: KX795337
> BO19805.complete
GAAGTTATCAGTCGACATGACTCTGCAATGTAATAATAATAATAATTTCG
CTTGCTTTTTAGGTCCCAACATGACTGCAGCGCCATACAACTACAACTAT
ATCTTTAAATACATCATCATTGGTGACATGGGCGTGGGCAAGTCCTGCCT
GCTCCACCAGTTCACCGAGAAGAAATTCATGGCCAATTGTCCTCACACCA
TTGGCGTGGAGTTCGGCACACGCATCATTGAGGTGGACGACAAAAAGATC
AAGCTACAGATCTGGGACACAGCGGGTCAGGAGCGATTCAGGGCAGTGAC
ACGCTCCTATTACCGTGGAGCAGCTGGTGCGCTGATGGTCTACGATATTA
CCAGGCGCTCCACGTACAATCACCTGAGCAGCTGGCTTACCGACACTCGC
AATCTCACCAATCCCAGCACTGTGATCTTTCTCATTGGCAACAAATCGGA
TCTGGAGAGCACTCGGGAGGTTACCTACGAGGAGGCCAAGGAGTTTGCCG
ACGAGAACGGCCTAATGTTTCTCGAAGCGAGCGCTATGACTGGCCAGAAT
GTGGAGGAGGCTTTTCTGGAGACCGCACGCAAGATTTACCAGAACATCCA
GGAGGGTCGGCTCGATCTGAACGCCTCCGAGTCCGGAGTTCAGCACAGGC
CATCGCAGCCGTCGCGAACTTCGCTGAGTAGCGAGGCTACGGGCGCCAAG
GATCAGTGCTCGTGCGCAAGCTTTCTAGACCAT
BO19805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-RB | 720 | CG4212-PB | 65..717 | 63..715 | 3265 | 100 | Plus |
| Rab14-RD | 648 | CG4212-PD | 1..645 | 71..715 | 3225 | 100 | Plus |
| Rab14-RA | 648 | CG4212-PA | 1..645 | 71..715 | 3225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-RD | 878 | CG4212-RD | 15..713 | 17..715 | 3495 | 100 | Plus |
| Rab14-RA | 1147 | CG4212-RA | 329..982 | 62..715 | 3270 | 100 | Plus |
| Rab14-RB | 1468 | CG4212-RB | 232..884 | 63..715 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14357754..14357937 | 357..540 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 14357520..14357700 | 177..357 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 14358006..14358180 | 541..715 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 14357295..14357454 | 17..176 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 17573952..17574104 | 194..346 | 240 | 77.1 | Plus |
| 2R | 25286936 | 2R | 6697481..6697567 | 197..283 | 180 | 80.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:16:40 has no hits.
BO19805.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-13 18:37:26 Download gff for
BO19805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RC | 16..714 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:47 Download gff for
BO19805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 15..713 | 17..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:39 Download gff for
BO19805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab14-RD | 15..713 | 17..717 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:39 Download gff for
BO19805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14357295..14357454 | 17..176 | 100 | -> | Plus |
| 2L | 14357520..14357700 | 177..357 | 100 | -> | Plus |
| 2L | 14357755..14357937 | 358..540 | 100 | -> | Plus |
| 2L | 14358006..14358180 | 541..717 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:47 Download gff for
BO19805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14357295..14357454 | 17..176 | 100 | -> | Plus |
| arm_2L | 14357520..14357700 | 177..357 | 100 | -> | Plus |
| arm_2L | 14357755..14357937 | 358..540 | 100 | -> | Plus |
| arm_2L | 14358006..14358180 | 541..717 | 98 | | Plus |
BO19805.pep Sequence
Translation from 16 to 733
> BO19805.pep
MTLQCNNNNNFACFLGPNMTAAPYNYNYIFKYIIIGDMGVGKSCLLHQFT
EKKFMANCPHTIGVEFGTRIIEVDDKKIKLQIWDTAGQERFRAVTRSYYR
GAAGALMVYDITRRSTYNHLSSWLTDTRNLTNPSTVIFLIGNKSDLESTR
EVTYEEAKEFADENGLMFLEASAMTGQNVEEAFLETARKIYQNIQEGRLD
LNASESGVQHRPSQPSRTSLSSEATGAKDQCSCASFLDH
BO19805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab14-PB | 239 | CG4212-PB | 23..239 | 17..233 | 1130 | 100 | Plus |
| Rab14-PD | 215 | CG4212-PD | 1..215 | 19..233 | 1117 | 100 | Plus |
| Rab14-PA | 215 | CG4212-PA | 1..215 | 19..233 | 1117 | 100 | Plus |
| Rab2-PB | 213 | CG3269-PB | 2..212 | 25..231 | 648 | 60.2 | Plus |
| Rab2-PA | 213 | CG3269-PA | 2..212 | 25..231 | 648 | 60.2 | Plus |
